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Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes
In high-altitude environments, the prevalence of high-altitude polycythemia (HAPC) ranges between 5 and 18 percent. However, there is currently no effective treatment for this condition. Therefore, disease prevention has emerged as a critical strategy against this disease. Here, we looked into the m...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9316656/ https://www.ncbi.nlm.nih.gov/pubmed/35885976 http://dx.doi.org/10.3390/genes13071193 |
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author | Wang, Haijing Liu, Daoxin Song, Pengfei Jiang, Feng Zhang, Tongzuo |
author_facet | Wang, Haijing Liu, Daoxin Song, Pengfei Jiang, Feng Zhang, Tongzuo |
author_sort | Wang, Haijing |
collection | PubMed |
description | In high-altitude environments, the prevalence of high-altitude polycythemia (HAPC) ranges between 5 and 18 percent. However, there is currently no effective treatment for this condition. Therefore, disease prevention has emerged as a critical strategy against this disease. Here, we looked into the microarray profiles of GSE135109 and GSE29977, linked to either short- or long-term exposure to the Qinghai Tibet Plateau (QTP). The results revealed inhibition in the adaptive immune response during 30 days of exposure to QTP. Following a gene set enrichment analysis (GSEA) discovered that genes associated with HAPC were enriched in Cluster1, which showed a dramatic upregulation on the third day after arriving at the QTP. We then used GeneLogit to construct a logistic prediction model, which allowed us to identify 50 genes that classify HAPC patients. In these genes, LRRC18 and HCAR3 were also significantly altered following early QTP exposure, suggesting that they may serve as hub genes for HAPC development. The in-depth study of a combination of the datasets of transcriptomic changes during exposure to a high altitude and whether diseases occur after long-term exposure in Hans can give us some inspiration about genes associated with HAPC development during adaption to high altitudes. |
format | Online Article Text |
id | pubmed-9316656 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-93166562022-07-27 Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes Wang, Haijing Liu, Daoxin Song, Pengfei Jiang, Feng Zhang, Tongzuo Genes (Basel) Article In high-altitude environments, the prevalence of high-altitude polycythemia (HAPC) ranges between 5 and 18 percent. However, there is currently no effective treatment for this condition. Therefore, disease prevention has emerged as a critical strategy against this disease. Here, we looked into the microarray profiles of GSE135109 and GSE29977, linked to either short- or long-term exposure to the Qinghai Tibet Plateau (QTP). The results revealed inhibition in the adaptive immune response during 30 days of exposure to QTP. Following a gene set enrichment analysis (GSEA) discovered that genes associated with HAPC were enriched in Cluster1, which showed a dramatic upregulation on the third day after arriving at the QTP. We then used GeneLogit to construct a logistic prediction model, which allowed us to identify 50 genes that classify HAPC patients. In these genes, LRRC18 and HCAR3 were also significantly altered following early QTP exposure, suggesting that they may serve as hub genes for HAPC development. The in-depth study of a combination of the datasets of transcriptomic changes during exposure to a high altitude and whether diseases occur after long-term exposure in Hans can give us some inspiration about genes associated with HAPC development during adaption to high altitudes. MDPI 2022-07-02 /pmc/articles/PMC9316656/ /pubmed/35885976 http://dx.doi.org/10.3390/genes13071193 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Wang, Haijing Liu, Daoxin Song, Pengfei Jiang, Feng Zhang, Tongzuo Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes |
title | Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes |
title_full | Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes |
title_fullStr | Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes |
title_full_unstemmed | Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes |
title_short | Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes |
title_sort | microarray-based prediction of polycythemia after exposure to high altitudes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9316656/ https://www.ncbi.nlm.nih.gov/pubmed/35885976 http://dx.doi.org/10.3390/genes13071193 |
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