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Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes

In high-altitude environments, the prevalence of high-altitude polycythemia (HAPC) ranges between 5 and 18 percent. However, there is currently no effective treatment for this condition. Therefore, disease prevention has emerged as a critical strategy against this disease. Here, we looked into the m...

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Autores principales: Wang, Haijing, Liu, Daoxin, Song, Pengfei, Jiang, Feng, Zhang, Tongzuo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9316656/
https://www.ncbi.nlm.nih.gov/pubmed/35885976
http://dx.doi.org/10.3390/genes13071193
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author Wang, Haijing
Liu, Daoxin
Song, Pengfei
Jiang, Feng
Zhang, Tongzuo
author_facet Wang, Haijing
Liu, Daoxin
Song, Pengfei
Jiang, Feng
Zhang, Tongzuo
author_sort Wang, Haijing
collection PubMed
description In high-altitude environments, the prevalence of high-altitude polycythemia (HAPC) ranges between 5 and 18 percent. However, there is currently no effective treatment for this condition. Therefore, disease prevention has emerged as a critical strategy against this disease. Here, we looked into the microarray profiles of GSE135109 and GSE29977, linked to either short- or long-term exposure to the Qinghai Tibet Plateau (QTP). The results revealed inhibition in the adaptive immune response during 30 days of exposure to QTP. Following a gene set enrichment analysis (GSEA) discovered that genes associated with HAPC were enriched in Cluster1, which showed a dramatic upregulation on the third day after arriving at the QTP. We then used GeneLogit to construct a logistic prediction model, which allowed us to identify 50 genes that classify HAPC patients. In these genes, LRRC18 and HCAR3 were also significantly altered following early QTP exposure, suggesting that they may serve as hub genes for HAPC development. The in-depth study of a combination of the datasets of transcriptomic changes during exposure to a high altitude and whether diseases occur after long-term exposure in Hans can give us some inspiration about genes associated with HAPC development during adaption to high altitudes.
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spelling pubmed-93166562022-07-27 Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes Wang, Haijing Liu, Daoxin Song, Pengfei Jiang, Feng Zhang, Tongzuo Genes (Basel) Article In high-altitude environments, the prevalence of high-altitude polycythemia (HAPC) ranges between 5 and 18 percent. However, there is currently no effective treatment for this condition. Therefore, disease prevention has emerged as a critical strategy against this disease. Here, we looked into the microarray profiles of GSE135109 and GSE29977, linked to either short- or long-term exposure to the Qinghai Tibet Plateau (QTP). The results revealed inhibition in the adaptive immune response during 30 days of exposure to QTP. Following a gene set enrichment analysis (GSEA) discovered that genes associated with HAPC were enriched in Cluster1, which showed a dramatic upregulation on the third day after arriving at the QTP. We then used GeneLogit to construct a logistic prediction model, which allowed us to identify 50 genes that classify HAPC patients. In these genes, LRRC18 and HCAR3 were also significantly altered following early QTP exposure, suggesting that they may serve as hub genes for HAPC development. The in-depth study of a combination of the datasets of transcriptomic changes during exposure to a high altitude and whether diseases occur after long-term exposure in Hans can give us some inspiration about genes associated with HAPC development during adaption to high altitudes. MDPI 2022-07-02 /pmc/articles/PMC9316656/ /pubmed/35885976 http://dx.doi.org/10.3390/genes13071193 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Haijing
Liu, Daoxin
Song, Pengfei
Jiang, Feng
Zhang, Tongzuo
Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes
title Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes
title_full Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes
title_fullStr Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes
title_full_unstemmed Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes
title_short Microarray-Based Prediction of Polycythemia after Exposure to High Altitudes
title_sort microarray-based prediction of polycythemia after exposure to high altitudes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9316656/
https://www.ncbi.nlm.nih.gov/pubmed/35885976
http://dx.doi.org/10.3390/genes13071193
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