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Machine Learning Model Based on Lipidomic Profile Information to Predict Sudden Infant Death Syndrome

Sudden infant death syndrome (SIDS) represents the leading cause of death in under one year of age in developing countries. Even in our century, its etiology is not clear, and there is no biomarker that is discriminative enough to predict the risk of suffering from it. Therefore, in this work, takin...

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Autores principales: Villagrana-Bañuelos, Karen E., Galván-Tejada, Carlos E., Galván-Tejada, Jorge I., Gamboa-Rosales, Hamurabi, Celaya-Padilla, José M., Soto-Murillo, Manuel A., Solís-Robles, Roberto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9317003/
https://www.ncbi.nlm.nih.gov/pubmed/35885829
http://dx.doi.org/10.3390/healthcare10071303
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author Villagrana-Bañuelos, Karen E.
Galván-Tejada, Carlos E.
Galván-Tejada, Jorge I.
Gamboa-Rosales, Hamurabi
Celaya-Padilla, José M.
Soto-Murillo, Manuel A.
Solís-Robles, Roberto
author_facet Villagrana-Bañuelos, Karen E.
Galván-Tejada, Carlos E.
Galván-Tejada, Jorge I.
Gamboa-Rosales, Hamurabi
Celaya-Padilla, José M.
Soto-Murillo, Manuel A.
Solís-Robles, Roberto
author_sort Villagrana-Bañuelos, Karen E.
collection PubMed
description Sudden infant death syndrome (SIDS) represents the leading cause of death in under one year of age in developing countries. Even in our century, its etiology is not clear, and there is no biomarker that is discriminative enough to predict the risk of suffering from it. Therefore, in this work, taking a public dataset on the lipidomic profile of babies who died from this syndrome compared to a control group, a univariate analysis was performed using the Mann–Whitney U test, with the aim of identifying the characteristics that enable discriminating between both groups. Those characteristics with a p-value less than or equal to 0.05 were taken; once these characteristics were obtained, classification models were implemented (random forests (RF), logistic regression (LR), support vector machine (SVM) and naive Bayes (NB)). We used seventy percent of the data for model training, subjecting it to a cross-validation (k = 5) and later submitting to validation in a blind test with 30% of the remaining data, which allows simulating the scenario in real life—that is, with an unknown population for the model. The model with the best performance was RF, since in the blind test, it obtained an AUC of 0.9, specificity of 1, and sensitivity of 0.8. The proposed model provides the basis for the construction of a SIDS risk prediction computer tool, which will contribute to prevention, and proposes lines of research to deal with this pathology.
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spelling pubmed-93170032022-07-27 Machine Learning Model Based on Lipidomic Profile Information to Predict Sudden Infant Death Syndrome Villagrana-Bañuelos, Karen E. Galván-Tejada, Carlos E. Galván-Tejada, Jorge I. Gamboa-Rosales, Hamurabi Celaya-Padilla, José M. Soto-Murillo, Manuel A. Solís-Robles, Roberto Healthcare (Basel) Article Sudden infant death syndrome (SIDS) represents the leading cause of death in under one year of age in developing countries. Even in our century, its etiology is not clear, and there is no biomarker that is discriminative enough to predict the risk of suffering from it. Therefore, in this work, taking a public dataset on the lipidomic profile of babies who died from this syndrome compared to a control group, a univariate analysis was performed using the Mann–Whitney U test, with the aim of identifying the characteristics that enable discriminating between both groups. Those characteristics with a p-value less than or equal to 0.05 were taken; once these characteristics were obtained, classification models were implemented (random forests (RF), logistic regression (LR), support vector machine (SVM) and naive Bayes (NB)). We used seventy percent of the data for model training, subjecting it to a cross-validation (k = 5) and later submitting to validation in a blind test with 30% of the remaining data, which allows simulating the scenario in real life—that is, with an unknown population for the model. The model with the best performance was RF, since in the blind test, it obtained an AUC of 0.9, specificity of 1, and sensitivity of 0.8. The proposed model provides the basis for the construction of a SIDS risk prediction computer tool, which will contribute to prevention, and proposes lines of research to deal with this pathology. MDPI 2022-07-14 /pmc/articles/PMC9317003/ /pubmed/35885829 http://dx.doi.org/10.3390/healthcare10071303 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Villagrana-Bañuelos, Karen E.
Galván-Tejada, Carlos E.
Galván-Tejada, Jorge I.
Gamboa-Rosales, Hamurabi
Celaya-Padilla, José M.
Soto-Murillo, Manuel A.
Solís-Robles, Roberto
Machine Learning Model Based on Lipidomic Profile Information to Predict Sudden Infant Death Syndrome
title Machine Learning Model Based on Lipidomic Profile Information to Predict Sudden Infant Death Syndrome
title_full Machine Learning Model Based on Lipidomic Profile Information to Predict Sudden Infant Death Syndrome
title_fullStr Machine Learning Model Based on Lipidomic Profile Information to Predict Sudden Infant Death Syndrome
title_full_unstemmed Machine Learning Model Based on Lipidomic Profile Information to Predict Sudden Infant Death Syndrome
title_short Machine Learning Model Based on Lipidomic Profile Information to Predict Sudden Infant Death Syndrome
title_sort machine learning model based on lipidomic profile information to predict sudden infant death syndrome
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9317003/
https://www.ncbi.nlm.nih.gov/pubmed/35885829
http://dx.doi.org/10.3390/healthcare10071303
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