Cargando…

Complete chloroplast genome of Exochorda serratifolia (Rosaceae)

Exochorda serratifolia (pearlbush) is a rosid shrub found in northeast Asia, including the Korean peninsula. This ornamental plant has white inflorescences and strong insect resistance; however, its genetic diversity is poorly understood and a complete plastid genome is unavailable. Here, we determi...

Descripción completa

Detalles Bibliográficos
Autores principales: Jo, Namsu, Kim, Serim, Yeruult, Enkhtsetseg, Park, Jin Hee, Lee, Jungho, Lee, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9318234/
https://www.ncbi.nlm.nih.gov/pubmed/35903299
http://dx.doi.org/10.1080/23802359.2022.2098857
_version_ 1784755241619554304
author Jo, Namsu
Kim, Serim
Yeruult, Enkhtsetseg
Park, Jin Hee
Lee, Jungho
Lee, Yi
author_facet Jo, Namsu
Kim, Serim
Yeruult, Enkhtsetseg
Park, Jin Hee
Lee, Jungho
Lee, Yi
author_sort Jo, Namsu
collection PubMed
description Exochorda serratifolia (pearlbush) is a rosid shrub found in northeast Asia, including the Korean peninsula. This ornamental plant has white inflorescences and strong insect resistance; however, its genetic diversity is poorly understood and a complete plastid genome is unavailable. Here, we determined the complete chloroplast genome of E. serratifolia through de novo assembly using next-generation sequencing. The E. serratifolia chloroplast genome was 160,558 bp, comprising a large single-copy (LSC) region of 88,514 bp, a small single-copy (SSC) region of 19,308 bp, and two inverted repeat regions (IRs) of 26,368 bp each. We annotated 112 genes: 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. This reference plastid genome increases our understanding of the phylogenetic relationships of E. serratifolia among Rosaceae plants.
format Online
Article
Text
id pubmed-9318234
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-93182342022-07-27 Complete chloroplast genome of Exochorda serratifolia (Rosaceae) Jo, Namsu Kim, Serim Yeruult, Enkhtsetseg Park, Jin Hee Lee, Jungho Lee, Yi Mitochondrial DNA B Resour Plastome Announcement Exochorda serratifolia (pearlbush) is a rosid shrub found in northeast Asia, including the Korean peninsula. This ornamental plant has white inflorescences and strong insect resistance; however, its genetic diversity is poorly understood and a complete plastid genome is unavailable. Here, we determined the complete chloroplast genome of E. serratifolia through de novo assembly using next-generation sequencing. The E. serratifolia chloroplast genome was 160,558 bp, comprising a large single-copy (LSC) region of 88,514 bp, a small single-copy (SSC) region of 19,308 bp, and two inverted repeat regions (IRs) of 26,368 bp each. We annotated 112 genes: 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. This reference plastid genome increases our understanding of the phylogenetic relationships of E. serratifolia among Rosaceae plants. Taylor & Francis 2022-07-25 /pmc/articles/PMC9318234/ /pubmed/35903299 http://dx.doi.org/10.1080/23802359.2022.2098857 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Jo, Namsu
Kim, Serim
Yeruult, Enkhtsetseg
Park, Jin Hee
Lee, Jungho
Lee, Yi
Complete chloroplast genome of Exochorda serratifolia (Rosaceae)
title Complete chloroplast genome of Exochorda serratifolia (Rosaceae)
title_full Complete chloroplast genome of Exochorda serratifolia (Rosaceae)
title_fullStr Complete chloroplast genome of Exochorda serratifolia (Rosaceae)
title_full_unstemmed Complete chloroplast genome of Exochorda serratifolia (Rosaceae)
title_short Complete chloroplast genome of Exochorda serratifolia (Rosaceae)
title_sort complete chloroplast genome of exochorda serratifolia (rosaceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9318234/
https://www.ncbi.nlm.nih.gov/pubmed/35903299
http://dx.doi.org/10.1080/23802359.2022.2098857
work_keys_str_mv AT jonamsu completechloroplastgenomeofexochordaserratifoliarosaceae
AT kimserim completechloroplastgenomeofexochordaserratifoliarosaceae
AT yeruultenkhtsetseg completechloroplastgenomeofexochordaserratifoliarosaceae
AT parkjinhee completechloroplastgenomeofexochordaserratifoliarosaceae
AT leejungho completechloroplastgenomeofexochordaserratifoliarosaceae
AT leeyi completechloroplastgenomeofexochordaserratifoliarosaceae