Cargando…
Complete chloroplast genome of Exochorda serratifolia (Rosaceae)
Exochorda serratifolia (pearlbush) is a rosid shrub found in northeast Asia, including the Korean peninsula. This ornamental plant has white inflorescences and strong insect resistance; however, its genetic diversity is poorly understood and a complete plastid genome is unavailable. Here, we determi...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9318234/ https://www.ncbi.nlm.nih.gov/pubmed/35903299 http://dx.doi.org/10.1080/23802359.2022.2098857 |
_version_ | 1784755241619554304 |
---|---|
author | Jo, Namsu Kim, Serim Yeruult, Enkhtsetseg Park, Jin Hee Lee, Jungho Lee, Yi |
author_facet | Jo, Namsu Kim, Serim Yeruult, Enkhtsetseg Park, Jin Hee Lee, Jungho Lee, Yi |
author_sort | Jo, Namsu |
collection | PubMed |
description | Exochorda serratifolia (pearlbush) is a rosid shrub found in northeast Asia, including the Korean peninsula. This ornamental plant has white inflorescences and strong insect resistance; however, its genetic diversity is poorly understood and a complete plastid genome is unavailable. Here, we determined the complete chloroplast genome of E. serratifolia through de novo assembly using next-generation sequencing. The E. serratifolia chloroplast genome was 160,558 bp, comprising a large single-copy (LSC) region of 88,514 bp, a small single-copy (SSC) region of 19,308 bp, and two inverted repeat regions (IRs) of 26,368 bp each. We annotated 112 genes: 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. This reference plastid genome increases our understanding of the phylogenetic relationships of E. serratifolia among Rosaceae plants. |
format | Online Article Text |
id | pubmed-9318234 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-93182342022-07-27 Complete chloroplast genome of Exochorda serratifolia (Rosaceae) Jo, Namsu Kim, Serim Yeruult, Enkhtsetseg Park, Jin Hee Lee, Jungho Lee, Yi Mitochondrial DNA B Resour Plastome Announcement Exochorda serratifolia (pearlbush) is a rosid shrub found in northeast Asia, including the Korean peninsula. This ornamental plant has white inflorescences and strong insect resistance; however, its genetic diversity is poorly understood and a complete plastid genome is unavailable. Here, we determined the complete chloroplast genome of E. serratifolia through de novo assembly using next-generation sequencing. The E. serratifolia chloroplast genome was 160,558 bp, comprising a large single-copy (LSC) region of 88,514 bp, a small single-copy (SSC) region of 19,308 bp, and two inverted repeat regions (IRs) of 26,368 bp each. We annotated 112 genes: 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. This reference plastid genome increases our understanding of the phylogenetic relationships of E. serratifolia among Rosaceae plants. Taylor & Francis 2022-07-25 /pmc/articles/PMC9318234/ /pubmed/35903299 http://dx.doi.org/10.1080/23802359.2022.2098857 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Jo, Namsu Kim, Serim Yeruult, Enkhtsetseg Park, Jin Hee Lee, Jungho Lee, Yi Complete chloroplast genome of Exochorda serratifolia (Rosaceae) |
title | Complete chloroplast genome of Exochorda serratifolia (Rosaceae) |
title_full | Complete chloroplast genome of Exochorda serratifolia (Rosaceae) |
title_fullStr | Complete chloroplast genome of Exochorda serratifolia (Rosaceae) |
title_full_unstemmed | Complete chloroplast genome of Exochorda serratifolia (Rosaceae) |
title_short | Complete chloroplast genome of Exochorda serratifolia (Rosaceae) |
title_sort | complete chloroplast genome of exochorda serratifolia (rosaceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9318234/ https://www.ncbi.nlm.nih.gov/pubmed/35903299 http://dx.doi.org/10.1080/23802359.2022.2098857 |
work_keys_str_mv | AT jonamsu completechloroplastgenomeofexochordaserratifoliarosaceae AT kimserim completechloroplastgenomeofexochordaserratifoliarosaceae AT yeruultenkhtsetseg completechloroplastgenomeofexochordaserratifoliarosaceae AT parkjinhee completechloroplastgenomeofexochordaserratifoliarosaceae AT leejungho completechloroplastgenomeofexochordaserratifoliarosaceae AT leeyi completechloroplastgenomeofexochordaserratifoliarosaceae |