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Genome-Wide Association Study of Airway Wall Thickening in a Korean Chronic Obstructive Pulmonary Disease Cohort
Airway wall thickening (AWT) plays an important pathophysiological role in airway diseases such as chronic obstructive pulmonary disease (COPD). There are only a few studies on the genetic components contributing to AWT in the Korean population. This study aimed to identify AWT-related single-nucleo...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9318537/ https://www.ncbi.nlm.nih.gov/pubmed/35886039 http://dx.doi.org/10.3390/genes13071258 |
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author | Do, Ah Ra Ko, Do Yeon Kim, Jeeyoung Bak, So Hyeon Lee, Ki Yeol Yoon, Dankyu Shin, Chol Kim, Soriul Kim, Woo Jin Won, Sungho |
author_facet | Do, Ah Ra Ko, Do Yeon Kim, Jeeyoung Bak, So Hyeon Lee, Ki Yeol Yoon, Dankyu Shin, Chol Kim, Soriul Kim, Woo Jin Won, Sungho |
author_sort | Do, Ah Ra |
collection | PubMed |
description | Airway wall thickening (AWT) plays an important pathophysiological role in airway diseases such as chronic obstructive pulmonary disease (COPD). There are only a few studies on the genetic components contributing to AWT in the Korean population. This study aimed to identify AWT-related single-nucleotide polymorphisms (SNPs) using a genome-wide association study (GWAS). We performed GWAS for AWT using the CODA and KUCOPD cohorts. Thereafter, a meta-analysis was performed. Airway wall thickness was measured using automatic segmentation software. The AWT at an internal perimeter of 10 mm (AWT-Pi10) was calculated by the square root of the theoretical airway wall area using the full-width-half-maximum method. We identified a significant SNP (rs11648772, p = 1.41 × 10(−8)) located in LINC02127, near SALL1. This gene is involved in the inhibition of epithelial–mesenchymal transition in glial cells, and it affects bronchial wall depression in COPD patients. Additionally, we identified other SNPs (rs11970854, p = 1.92 × 10(−6); rs16920168, p = 5.29 × 10(−6)) involved in airway inflammation and proliferation and found that AWT is influenced by these genetic variants. Our study helps identify the genetic cause of COPD in an Asian population and provides a potential basis for treatment. |
format | Online Article Text |
id | pubmed-9318537 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-93185372022-07-27 Genome-Wide Association Study of Airway Wall Thickening in a Korean Chronic Obstructive Pulmonary Disease Cohort Do, Ah Ra Ko, Do Yeon Kim, Jeeyoung Bak, So Hyeon Lee, Ki Yeol Yoon, Dankyu Shin, Chol Kim, Soriul Kim, Woo Jin Won, Sungho Genes (Basel) Article Airway wall thickening (AWT) plays an important pathophysiological role in airway diseases such as chronic obstructive pulmonary disease (COPD). There are only a few studies on the genetic components contributing to AWT in the Korean population. This study aimed to identify AWT-related single-nucleotide polymorphisms (SNPs) using a genome-wide association study (GWAS). We performed GWAS for AWT using the CODA and KUCOPD cohorts. Thereafter, a meta-analysis was performed. Airway wall thickness was measured using automatic segmentation software. The AWT at an internal perimeter of 10 mm (AWT-Pi10) was calculated by the square root of the theoretical airway wall area using the full-width-half-maximum method. We identified a significant SNP (rs11648772, p = 1.41 × 10(−8)) located in LINC02127, near SALL1. This gene is involved in the inhibition of epithelial–mesenchymal transition in glial cells, and it affects bronchial wall depression in COPD patients. Additionally, we identified other SNPs (rs11970854, p = 1.92 × 10(−6); rs16920168, p = 5.29 × 10(−6)) involved in airway inflammation and proliferation and found that AWT is influenced by these genetic variants. Our study helps identify the genetic cause of COPD in an Asian population and provides a potential basis for treatment. MDPI 2022-07-15 /pmc/articles/PMC9318537/ /pubmed/35886039 http://dx.doi.org/10.3390/genes13071258 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Do, Ah Ra Ko, Do Yeon Kim, Jeeyoung Bak, So Hyeon Lee, Ki Yeol Yoon, Dankyu Shin, Chol Kim, Soriul Kim, Woo Jin Won, Sungho Genome-Wide Association Study of Airway Wall Thickening in a Korean Chronic Obstructive Pulmonary Disease Cohort |
title | Genome-Wide Association Study of Airway Wall Thickening in a Korean Chronic Obstructive Pulmonary Disease Cohort |
title_full | Genome-Wide Association Study of Airway Wall Thickening in a Korean Chronic Obstructive Pulmonary Disease Cohort |
title_fullStr | Genome-Wide Association Study of Airway Wall Thickening in a Korean Chronic Obstructive Pulmonary Disease Cohort |
title_full_unstemmed | Genome-Wide Association Study of Airway Wall Thickening in a Korean Chronic Obstructive Pulmonary Disease Cohort |
title_short | Genome-Wide Association Study of Airway Wall Thickening in a Korean Chronic Obstructive Pulmonary Disease Cohort |
title_sort | genome-wide association study of airway wall thickening in a korean chronic obstructive pulmonary disease cohort |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9318537/ https://www.ncbi.nlm.nih.gov/pubmed/35886039 http://dx.doi.org/10.3390/genes13071258 |
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