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Genome-Wide Characterization and Expression Analysis of GeBP Family Genes in Soybean

The glabrous-enhancer-binding protein (GeBP) family is a family of plant-specific transcription factors, whose members share a central DNA-binding domain. Previous studies have already proven that GeBP genes are involved in the control of cell expansion but not cell proliferation in Arabidopsis. How...

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Autores principales: Liu, Sushuang, Liu, Yanmin, Liu, Chundong, Zhang, Feixue, Wei, Jiaping, Li, Bingxuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9318833/
https://www.ncbi.nlm.nih.gov/pubmed/35890483
http://dx.doi.org/10.3390/plants11141848
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author Liu, Sushuang
Liu, Yanmin
Liu, Chundong
Zhang, Feixue
Wei, Jiaping
Li, Bingxuan
author_facet Liu, Sushuang
Liu, Yanmin
Liu, Chundong
Zhang, Feixue
Wei, Jiaping
Li, Bingxuan
author_sort Liu, Sushuang
collection PubMed
description The glabrous-enhancer-binding protein (GeBP) family is a family of plant-specific transcription factors, whose members share a central DNA-binding domain. Previous studies have already proven that GeBP genes are involved in the control of cell expansion but not cell proliferation in Arabidopsis. However, there has not yet been a versatile analysis of the GeBP genes’ function in soybean (Glycine max L.). Here, we identified and named 9 GmGeBP genes in the soybean genome. These genes were distributed on 7 of the 20 chromosomes and the intron numbers ranged from zero to one. According to the phylogenetic tree, 52 GeBP genes obtained from four plant species were clustered into major four groups. Through the RNA-seq analysis of the nine GmGeBP genes, 8 of 9 GmGeBP genes were be found to expressed differentially across the 14 tissues. Additionally, among nine GmGeBP genes, only GeBP4 were highly expressed in abnormal trichome soybeans, which was predicted to be involved in trichome development. This genome-wide analysis of GmGeBP genes helps to provide an overview of the evolution and functions of two kinds of soybean plants. These results will help to clarify the potential functions and characteristics of GmGeBP genes in the soybean life cycle.
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spelling pubmed-93188332022-07-27 Genome-Wide Characterization and Expression Analysis of GeBP Family Genes in Soybean Liu, Sushuang Liu, Yanmin Liu, Chundong Zhang, Feixue Wei, Jiaping Li, Bingxuan Plants (Basel) Article The glabrous-enhancer-binding protein (GeBP) family is a family of plant-specific transcription factors, whose members share a central DNA-binding domain. Previous studies have already proven that GeBP genes are involved in the control of cell expansion but not cell proliferation in Arabidopsis. However, there has not yet been a versatile analysis of the GeBP genes’ function in soybean (Glycine max L.). Here, we identified and named 9 GmGeBP genes in the soybean genome. These genes were distributed on 7 of the 20 chromosomes and the intron numbers ranged from zero to one. According to the phylogenetic tree, 52 GeBP genes obtained from four plant species were clustered into major four groups. Through the RNA-seq analysis of the nine GmGeBP genes, 8 of 9 GmGeBP genes were be found to expressed differentially across the 14 tissues. Additionally, among nine GmGeBP genes, only GeBP4 were highly expressed in abnormal trichome soybeans, which was predicted to be involved in trichome development. This genome-wide analysis of GmGeBP genes helps to provide an overview of the evolution and functions of two kinds of soybean plants. These results will help to clarify the potential functions and characteristics of GmGeBP genes in the soybean life cycle. MDPI 2022-07-14 /pmc/articles/PMC9318833/ /pubmed/35890483 http://dx.doi.org/10.3390/plants11141848 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Sushuang
Liu, Yanmin
Liu, Chundong
Zhang, Feixue
Wei, Jiaping
Li, Bingxuan
Genome-Wide Characterization and Expression Analysis of GeBP Family Genes in Soybean
title Genome-Wide Characterization and Expression Analysis of GeBP Family Genes in Soybean
title_full Genome-Wide Characterization and Expression Analysis of GeBP Family Genes in Soybean
title_fullStr Genome-Wide Characterization and Expression Analysis of GeBP Family Genes in Soybean
title_full_unstemmed Genome-Wide Characterization and Expression Analysis of GeBP Family Genes in Soybean
title_short Genome-Wide Characterization and Expression Analysis of GeBP Family Genes in Soybean
title_sort genome-wide characterization and expression analysis of gebp family genes in soybean
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9318833/
https://www.ncbi.nlm.nih.gov/pubmed/35890483
http://dx.doi.org/10.3390/plants11141848
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