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Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues
Structural features of proteins provide powerful insights into biological function and similarity. Specifically, previous work has demonstrated that structural features of tissue and drug-treated cell line samples can be used to predict tissue type and characterize drug relationships, respectively....
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9319604/ https://www.ncbi.nlm.nih.gov/pubmed/35881481 http://dx.doi.org/10.1093/database/baac053 |
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author | Zatorski, Nicole Stein, David Rahman, Rayees Iyengar, Ravi Schlessinger, Avner |
author_facet | Zatorski, Nicole Stein, David Rahman, Rayees Iyengar, Ravi Schlessinger, Avner |
author_sort | Zatorski, Nicole |
collection | PubMed |
description | Structural features of proteins provide powerful insights into biological function and similarity. Specifically, previous work has demonstrated that structural features of tissue and drug-treated cell line samples can be used to predict tissue type and characterize drug relationships, respectively. We have developed structural signatures, a web server for annotating and analyzing protein features from gene sets that are often found in transcriptomic and proteomic data. This platform provides access to a structural feature database derived from normal and disease human tissue samples. We show how analysis using this database can shed light on the relationship between states of single-cell RNA-sequencing lung cancer samples. These various structural feature signatures can be visualized on the server itself or downloaded for additional analysis. The structural signatures server tool is freely available at https://structural-server.kinametrix.com/. |
format | Online Article Text |
id | pubmed-9319604 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-93196042022-07-27 Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues Zatorski, Nicole Stein, David Rahman, Rayees Iyengar, Ravi Schlessinger, Avner Database (Oxford) Database Tool Structural features of proteins provide powerful insights into biological function and similarity. Specifically, previous work has demonstrated that structural features of tissue and drug-treated cell line samples can be used to predict tissue type and characterize drug relationships, respectively. We have developed structural signatures, a web server for annotating and analyzing protein features from gene sets that are often found in transcriptomic and proteomic data. This platform provides access to a structural feature database derived from normal and disease human tissue samples. We show how analysis using this database can shed light on the relationship between states of single-cell RNA-sequencing lung cancer samples. These various structural feature signatures can be visualized on the server itself or downloaded for additional analysis. The structural signatures server tool is freely available at https://structural-server.kinametrix.com/. Oxford University Press 2022-07-26 /pmc/articles/PMC9319604/ /pubmed/35881481 http://dx.doi.org/10.1093/database/baac053 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Tool Zatorski, Nicole Stein, David Rahman, Rayees Iyengar, Ravi Schlessinger, Avner Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues |
title | Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues |
title_full | Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues |
title_fullStr | Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues |
title_full_unstemmed | Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues |
title_short | Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues |
title_sort | structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues |
topic | Database Tool |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9319604/ https://www.ncbi.nlm.nih.gov/pubmed/35881481 http://dx.doi.org/10.1093/database/baac053 |
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