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Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues

Structural features of proteins provide powerful insights into biological function and similarity. Specifically, previous work has demonstrated that structural features of tissue and drug-treated cell line samples can be used to predict tissue type and characterize drug relationships, respectively....

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Autores principales: Zatorski, Nicole, Stein, David, Rahman, Rayees, Iyengar, Ravi, Schlessinger, Avner
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9319604/
https://www.ncbi.nlm.nih.gov/pubmed/35881481
http://dx.doi.org/10.1093/database/baac053
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author Zatorski, Nicole
Stein, David
Rahman, Rayees
Iyengar, Ravi
Schlessinger, Avner
author_facet Zatorski, Nicole
Stein, David
Rahman, Rayees
Iyengar, Ravi
Schlessinger, Avner
author_sort Zatorski, Nicole
collection PubMed
description Structural features of proteins provide powerful insights into biological function and similarity. Specifically, previous work has demonstrated that structural features of tissue and drug-treated cell line samples can be used to predict tissue type and characterize drug relationships, respectively. We have developed structural signatures, a web server for annotating and analyzing protein features from gene sets that are often found in transcriptomic and proteomic data. This platform provides access to a structural feature database derived from normal and disease human tissue samples. We show how analysis using this database can shed light on the relationship between states of single-cell RNA-sequencing lung cancer samples. These various structural feature signatures can be visualized on the server itself or downloaded for additional analysis. The structural signatures server tool is freely available at https://structural-server.kinametrix.com/.
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spelling pubmed-93196042022-07-27 Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues Zatorski, Nicole Stein, David Rahman, Rayees Iyengar, Ravi Schlessinger, Avner Database (Oxford) Database Tool Structural features of proteins provide powerful insights into biological function and similarity. Specifically, previous work has demonstrated that structural features of tissue and drug-treated cell line samples can be used to predict tissue type and characterize drug relationships, respectively. We have developed structural signatures, a web server for annotating and analyzing protein features from gene sets that are often found in transcriptomic and proteomic data. This platform provides access to a structural feature database derived from normal and disease human tissue samples. We show how analysis using this database can shed light on the relationship between states of single-cell RNA-sequencing lung cancer samples. These various structural feature signatures can be visualized on the server itself or downloaded for additional analysis. The structural signatures server tool is freely available at https://structural-server.kinametrix.com/. Oxford University Press 2022-07-26 /pmc/articles/PMC9319604/ /pubmed/35881481 http://dx.doi.org/10.1093/database/baac053 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Tool
Zatorski, Nicole
Stein, David
Rahman, Rayees
Iyengar, Ravi
Schlessinger, Avner
Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues
title Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues
title_full Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues
title_fullStr Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues
title_full_unstemmed Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues
title_short Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues
title_sort structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9319604/
https://www.ncbi.nlm.nih.gov/pubmed/35881481
http://dx.doi.org/10.1093/database/baac053
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