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A novel prognostic signature of metastasis-associated genes and personalized therapeutic strategy for lung adenocarcinoma patients
Lung adenocarcinoma (LUAD) is a highly invasive and metastatic malignant tumor with high morbidity and mortality. This study aimed to construct a prognostic signature for LUAD patients based on metastasis-associated genes (MAGs). RNA expression profiles were downloaded from the Cancer Genome Atlas (...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9320549/ https://www.ncbi.nlm.nih.gov/pubmed/35830566 http://dx.doi.org/10.18632/aging.204169 |
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author | Wang, Zhihao Liu, Yusi Zhan, Xiaoqian Wang, Xi Zhang, Chao Qin, Lingzhi Liu, Liwei Qin, Shenghui |
author_facet | Wang, Zhihao Liu, Yusi Zhan, Xiaoqian Wang, Xi Zhang, Chao Qin, Lingzhi Liu, Liwei Qin, Shenghui |
author_sort | Wang, Zhihao |
collection | PubMed |
description | Lung adenocarcinoma (LUAD) is a highly invasive and metastatic malignant tumor with high morbidity and mortality. This study aimed to construct a prognostic signature for LUAD patients based on metastasis-associated genes (MAGs). RNA expression profiles were downloaded from the Cancer Genome Atlas (TCGA) database. RRA method was applied to identify differentially expressed MAGs. A total of 192 significantly robust MAGs were determined among seven GEO datasets. MAGs were initially selected through the Lasso Cox regression analysis and 6 MAGs were included to construct a prognostic signature model. Transcriptome profile, patient prognosis, correlation between the risk score and clinicopathological features, immune cell infiltration characteristics, immunotherapy sensitivity and chemotherapy sensitivity differed between low- and high-risk groups after grouping according to median risk score. The reliability and applicability of the signature were further validated in the GSE31210, GSE50081 and GSE68465 cohort. CMap predicted 62 small molecule drugs on the base of the prognostic MAGs. Targeted drug staurosporine had hydrogen bonding with Gln-172 of SLC2A1, which is one of MAGs. Staurosporine could inhibit cell migration in A549 and H1299. We further verified mRNA and protein expression of 6 MAGs in A549 and H1299. The signature can serve as a promising prognostic tool and may provide a novel personalized therapeutic strategy for LUAD patients. |
format | Online Article Text |
id | pubmed-9320549 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-93205492022-07-27 A novel prognostic signature of metastasis-associated genes and personalized therapeutic strategy for lung adenocarcinoma patients Wang, Zhihao Liu, Yusi Zhan, Xiaoqian Wang, Xi Zhang, Chao Qin, Lingzhi Liu, Liwei Qin, Shenghui Aging (Albany NY) Research Paper Lung adenocarcinoma (LUAD) is a highly invasive and metastatic malignant tumor with high morbidity and mortality. This study aimed to construct a prognostic signature for LUAD patients based on metastasis-associated genes (MAGs). RNA expression profiles were downloaded from the Cancer Genome Atlas (TCGA) database. RRA method was applied to identify differentially expressed MAGs. A total of 192 significantly robust MAGs were determined among seven GEO datasets. MAGs were initially selected through the Lasso Cox regression analysis and 6 MAGs were included to construct a prognostic signature model. Transcriptome profile, patient prognosis, correlation between the risk score and clinicopathological features, immune cell infiltration characteristics, immunotherapy sensitivity and chemotherapy sensitivity differed between low- and high-risk groups after grouping according to median risk score. The reliability and applicability of the signature were further validated in the GSE31210, GSE50081 and GSE68465 cohort. CMap predicted 62 small molecule drugs on the base of the prognostic MAGs. Targeted drug staurosporine had hydrogen bonding with Gln-172 of SLC2A1, which is one of MAGs. Staurosporine could inhibit cell migration in A549 and H1299. We further verified mRNA and protein expression of 6 MAGs in A549 and H1299. The signature can serve as a promising prognostic tool and may provide a novel personalized therapeutic strategy for LUAD patients. Impact Journals 2022-07-12 /pmc/articles/PMC9320549/ /pubmed/35830566 http://dx.doi.org/10.18632/aging.204169 Text en Copyright: © 2022 Wang et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Wang, Zhihao Liu, Yusi Zhan, Xiaoqian Wang, Xi Zhang, Chao Qin, Lingzhi Liu, Liwei Qin, Shenghui A novel prognostic signature of metastasis-associated genes and personalized therapeutic strategy for lung adenocarcinoma patients |
title | A novel prognostic signature of metastasis-associated genes and personalized therapeutic strategy for lung adenocarcinoma patients |
title_full | A novel prognostic signature of metastasis-associated genes and personalized therapeutic strategy for lung adenocarcinoma patients |
title_fullStr | A novel prognostic signature of metastasis-associated genes and personalized therapeutic strategy for lung adenocarcinoma patients |
title_full_unstemmed | A novel prognostic signature of metastasis-associated genes and personalized therapeutic strategy for lung adenocarcinoma patients |
title_short | A novel prognostic signature of metastasis-associated genes and personalized therapeutic strategy for lung adenocarcinoma patients |
title_sort | novel prognostic signature of metastasis-associated genes and personalized therapeutic strategy for lung adenocarcinoma patients |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9320549/ https://www.ncbi.nlm.nih.gov/pubmed/35830566 http://dx.doi.org/10.18632/aging.204169 |
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