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TraVis Pies: A Guide for Stable Isotope Metabolomics Interpretation Using an Intuitive Visualization
Tracer metabolomics is a powerful technology for the biomedical community to study and understand disease-inflicted metabolic mechanisms. However, the interpretation of tracer metabolomics results is highly technical, as the metabolites’ abundances, tracer incorporation and positions on the metaboli...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9321460/ https://www.ncbi.nlm.nih.gov/pubmed/35888717 http://dx.doi.org/10.3390/metabo12070593 |
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author | De Craemer, Sam Driesen, Karen Ghesquière, Bart |
author_facet | De Craemer, Sam Driesen, Karen Ghesquière, Bart |
author_sort | De Craemer, Sam |
collection | PubMed |
description | Tracer metabolomics is a powerful technology for the biomedical community to study and understand disease-inflicted metabolic mechanisms. However, the interpretation of tracer metabolomics results is highly technical, as the metabolites’ abundances, tracer incorporation and positions on the metabolic map all must be jointly interpreted. The field is currently lacking a structured approach to help less experienced researchers start the interpretation of tracer metabolomics datasets. We propose an approach using an intuitive visualization concept aided by a novel open-source tool, and provide guidelines on how researchers can apply the approach and the visualization tool to their own datasets. Using a showcase experiment, we demonstrate that the visualization approach leads to an intuitive interpretation that can ease researchers into understanding their tracer metabolomics data. |
format | Online Article Text |
id | pubmed-9321460 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-93214602022-07-27 TraVis Pies: A Guide for Stable Isotope Metabolomics Interpretation Using an Intuitive Visualization De Craemer, Sam Driesen, Karen Ghesquière, Bart Metabolites Article Tracer metabolomics is a powerful technology for the biomedical community to study and understand disease-inflicted metabolic mechanisms. However, the interpretation of tracer metabolomics results is highly technical, as the metabolites’ abundances, tracer incorporation and positions on the metabolic map all must be jointly interpreted. The field is currently lacking a structured approach to help less experienced researchers start the interpretation of tracer metabolomics datasets. We propose an approach using an intuitive visualization concept aided by a novel open-source tool, and provide guidelines on how researchers can apply the approach and the visualization tool to their own datasets. Using a showcase experiment, we demonstrate that the visualization approach leads to an intuitive interpretation that can ease researchers into understanding their tracer metabolomics data. MDPI 2022-06-25 /pmc/articles/PMC9321460/ /pubmed/35888717 http://dx.doi.org/10.3390/metabo12070593 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article De Craemer, Sam Driesen, Karen Ghesquière, Bart TraVis Pies: A Guide for Stable Isotope Metabolomics Interpretation Using an Intuitive Visualization |
title | TraVis Pies: A Guide for Stable Isotope Metabolomics Interpretation Using an Intuitive Visualization |
title_full | TraVis Pies: A Guide for Stable Isotope Metabolomics Interpretation Using an Intuitive Visualization |
title_fullStr | TraVis Pies: A Guide for Stable Isotope Metabolomics Interpretation Using an Intuitive Visualization |
title_full_unstemmed | TraVis Pies: A Guide for Stable Isotope Metabolomics Interpretation Using an Intuitive Visualization |
title_short | TraVis Pies: A Guide for Stable Isotope Metabolomics Interpretation Using an Intuitive Visualization |
title_sort | travis pies: a guide for stable isotope metabolomics interpretation using an intuitive visualization |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9321460/ https://www.ncbi.nlm.nih.gov/pubmed/35888717 http://dx.doi.org/10.3390/metabo12070593 |
work_keys_str_mv | AT decraemersam travispiesaguideforstableisotopemetabolomicsinterpretationusinganintuitivevisualization AT driesenkaren travispiesaguideforstableisotopemetabolomicsinterpretationusinganintuitivevisualization AT ghesquierebart travispiesaguideforstableisotopemetabolomicsinterpretationusinganintuitivevisualization |