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Comparison of approximate intermolecular potentials for ab initio fragment calculations on medium sized N‐heterocycles
The ground state intermolecular potential of bimolecular complexes of N‐heterocycles is analyzed for the impact of individual terms in the interaction energy as provided by various, conceptually different theories. Novel combinations with several formulations of the electrostatic, Pauli repulsion, a...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9321956/ https://www.ncbi.nlm.nih.gov/pubmed/35478353 http://dx.doi.org/10.1002/jcc.26866 |
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author | Barcza, Bónis Szirmai, Ádám B. Szántó, Katalin J. Tajti, Attila Szalay, Péter G. |
author_facet | Barcza, Bónis Szirmai, Ádám B. Szántó, Katalin J. Tajti, Attila Szalay, Péter G. |
author_sort | Barcza, Bónis |
collection | PubMed |
description | The ground state intermolecular potential of bimolecular complexes of N‐heterocycles is analyzed for the impact of individual terms in the interaction energy as provided by various, conceptually different theories. Novel combinations with several formulations of the electrostatic, Pauli repulsion, and dispersion contributions are tested at both short‐ and long‐distance sides of the potential energy surface, for various alignments of the pyrrole dimer as well as the cytosine–uracil complex. The integration of a DFT/CCSD density embedding scheme, with dispersion terms from the effective fragment potential (EFP) method is found to provide good agreement with a reference CCSD(T) potential overall; simultaneously, a quantum mechanics/molecular mechanics approach using CHELPG atomic point charges for the electrostatic interaction, augmented by EFP dispersion and Pauli repulsion, comes also close to the reference result. Both schemes have the advantage of not relying on predefined force fields; rather, the interaction parameters can be determined for the system under study, thus being excellent candidates for ab initio modeling. |
format | Online Article Text |
id | pubmed-9321956 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93219562022-07-30 Comparison of approximate intermolecular potentials for ab initio fragment calculations on medium sized N‐heterocycles Barcza, Bónis Szirmai, Ádám B. Szántó, Katalin J. Tajti, Attila Szalay, Péter G. J Comput Chem Research Articles The ground state intermolecular potential of bimolecular complexes of N‐heterocycles is analyzed for the impact of individual terms in the interaction energy as provided by various, conceptually different theories. Novel combinations with several formulations of the electrostatic, Pauli repulsion, and dispersion contributions are tested at both short‐ and long‐distance sides of the potential energy surface, for various alignments of the pyrrole dimer as well as the cytosine–uracil complex. The integration of a DFT/CCSD density embedding scheme, with dispersion terms from the effective fragment potential (EFP) method is found to provide good agreement with a reference CCSD(T) potential overall; simultaneously, a quantum mechanics/molecular mechanics approach using CHELPG atomic point charges for the electrostatic interaction, augmented by EFP dispersion and Pauli repulsion, comes also close to the reference result. Both schemes have the advantage of not relying on predefined force fields; rather, the interaction parameters can be determined for the system under study, thus being excellent candidates for ab initio modeling. John Wiley & Sons, Inc. 2022-04-28 2022-06-15 /pmc/articles/PMC9321956/ /pubmed/35478353 http://dx.doi.org/10.1002/jcc.26866 Text en © 2022 The Authors. Journal of Computational Chemistry published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Barcza, Bónis Szirmai, Ádám B. Szántó, Katalin J. Tajti, Attila Szalay, Péter G. Comparison of approximate intermolecular potentials for ab initio fragment calculations on medium sized N‐heterocycles |
title | Comparison of approximate intermolecular potentials for ab initio fragment calculations on medium sized N‐heterocycles |
title_full | Comparison of approximate intermolecular potentials for ab initio fragment calculations on medium sized N‐heterocycles |
title_fullStr | Comparison of approximate intermolecular potentials for ab initio fragment calculations on medium sized N‐heterocycles |
title_full_unstemmed | Comparison of approximate intermolecular potentials for ab initio fragment calculations on medium sized N‐heterocycles |
title_short | Comparison of approximate intermolecular potentials for ab initio fragment calculations on medium sized N‐heterocycles |
title_sort | comparison of approximate intermolecular potentials for ab initio fragment calculations on medium sized n‐heterocycles |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9321956/ https://www.ncbi.nlm.nih.gov/pubmed/35478353 http://dx.doi.org/10.1002/jcc.26866 |
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