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Federated Learning-Based Detection of Invasive Carcinoma of No Special Type with Histopathological Images

Invasive carcinoma of no special type (IC-NST) is known to be one of the most prevalent kinds of breast cancer, hence the growing research interest in studying automated systems that can detect the presence of breast tumors and appropriately classify them into subtypes. Machine learning (ML) and, mo...

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Autores principales: Agbley, Bless Lord Y., Li, Jianping, Hossin, Md Altab, Nneji, Grace Ugochi, Jackson, Jehoiada, Monday, Happy Nkanta, James, Edidiong Christopher
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9323034/
https://www.ncbi.nlm.nih.gov/pubmed/35885573
http://dx.doi.org/10.3390/diagnostics12071669
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author Agbley, Bless Lord Y.
Li, Jianping
Hossin, Md Altab
Nneji, Grace Ugochi
Jackson, Jehoiada
Monday, Happy Nkanta
James, Edidiong Christopher
author_facet Agbley, Bless Lord Y.
Li, Jianping
Hossin, Md Altab
Nneji, Grace Ugochi
Jackson, Jehoiada
Monday, Happy Nkanta
James, Edidiong Christopher
author_sort Agbley, Bless Lord Y.
collection PubMed
description Invasive carcinoma of no special type (IC-NST) is known to be one of the most prevalent kinds of breast cancer, hence the growing research interest in studying automated systems that can detect the presence of breast tumors and appropriately classify them into subtypes. Machine learning (ML) and, more specifically, deep learning (DL) techniques have been used to approach this problem. However, such techniques usually require massive amounts of data to obtain competitive results. This requirement makes their application in specific areas such as health problematic as privacy concerns regarding the release of patients’ data publicly result in a limited number of publicly available datasets for the research community. This paper proposes an approach that leverages federated learning (FL) to securely train mathematical models over multiple clients with local IC-NST images partitioned from the breast histopathology image (BHI) dataset to obtain a global model. First, we used residual neural networks for automatic feature extraction. Then, we proposed a second network consisting of Gabor kernels to extract another set of features from the IC-NST dataset. After that, we performed a late fusion of the two sets of features and passed the output through a custom classifier. Experiments were conducted for the federated learning (FL) and centralized learning (CL) scenarios, and the results were compared. Competitive results were obtained, indicating the positive prospects of adopting FL for IC-NST detection. Additionally, fusing the Gabor features with the residual neural network features resulted in the best performance in terms of accuracy, F1 score, and area under the receiver operation curve (AUC-ROC). The models show good generalization by performing well on another domain dataset, the breast cancer histopathological (BreakHis) image dataset. Our method also outperformed other methods from the literature.
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spelling pubmed-93230342022-07-27 Federated Learning-Based Detection of Invasive Carcinoma of No Special Type with Histopathological Images Agbley, Bless Lord Y. Li, Jianping Hossin, Md Altab Nneji, Grace Ugochi Jackson, Jehoiada Monday, Happy Nkanta James, Edidiong Christopher Diagnostics (Basel) Article Invasive carcinoma of no special type (IC-NST) is known to be one of the most prevalent kinds of breast cancer, hence the growing research interest in studying automated systems that can detect the presence of breast tumors and appropriately classify them into subtypes. Machine learning (ML) and, more specifically, deep learning (DL) techniques have been used to approach this problem. However, such techniques usually require massive amounts of data to obtain competitive results. This requirement makes their application in specific areas such as health problematic as privacy concerns regarding the release of patients’ data publicly result in a limited number of publicly available datasets for the research community. This paper proposes an approach that leverages federated learning (FL) to securely train mathematical models over multiple clients with local IC-NST images partitioned from the breast histopathology image (BHI) dataset to obtain a global model. First, we used residual neural networks for automatic feature extraction. Then, we proposed a second network consisting of Gabor kernels to extract another set of features from the IC-NST dataset. After that, we performed a late fusion of the two sets of features and passed the output through a custom classifier. Experiments were conducted for the federated learning (FL) and centralized learning (CL) scenarios, and the results were compared. Competitive results were obtained, indicating the positive prospects of adopting FL for IC-NST detection. Additionally, fusing the Gabor features with the residual neural network features resulted in the best performance in terms of accuracy, F1 score, and area under the receiver operation curve (AUC-ROC). The models show good generalization by performing well on another domain dataset, the breast cancer histopathological (BreakHis) image dataset. Our method also outperformed other methods from the literature. MDPI 2022-07-09 /pmc/articles/PMC9323034/ /pubmed/35885573 http://dx.doi.org/10.3390/diagnostics12071669 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Agbley, Bless Lord Y.
Li, Jianping
Hossin, Md Altab
Nneji, Grace Ugochi
Jackson, Jehoiada
Monday, Happy Nkanta
James, Edidiong Christopher
Federated Learning-Based Detection of Invasive Carcinoma of No Special Type with Histopathological Images
title Federated Learning-Based Detection of Invasive Carcinoma of No Special Type with Histopathological Images
title_full Federated Learning-Based Detection of Invasive Carcinoma of No Special Type with Histopathological Images
title_fullStr Federated Learning-Based Detection of Invasive Carcinoma of No Special Type with Histopathological Images
title_full_unstemmed Federated Learning-Based Detection of Invasive Carcinoma of No Special Type with Histopathological Images
title_short Federated Learning-Based Detection of Invasive Carcinoma of No Special Type with Histopathological Images
title_sort federated learning-based detection of invasive carcinoma of no special type with histopathological images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9323034/
https://www.ncbi.nlm.nih.gov/pubmed/35885573
http://dx.doi.org/10.3390/diagnostics12071669
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