Cargando…

How the Chalcogen Atom Size Dictates the Hydrogen‐Bond Donor Capability of Carboxamides, Thioamides, and Selenoamides

The amino groups of thio‐ and selenoamides can act as stronger hydrogen‐bond donors than of carboxamides, despite the lower electronegativity of S and Se. This phenomenon has been experimentally explored, particularly in organocatalysis, but a sound electronic explanation is lacking. Our quantum che...

Descripción completa

Detalles Bibliográficos
Autores principales: Nieuwland, Celine, Fonseca Guerra, Célia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9324920/
https://www.ncbi.nlm.nih.gov/pubmed/35322485
http://dx.doi.org/10.1002/chem.202200755
_version_ 1784756920835375104
author Nieuwland, Celine
Fonseca Guerra, Célia
author_facet Nieuwland, Celine
Fonseca Guerra, Célia
author_sort Nieuwland, Celine
collection PubMed
description The amino groups of thio‐ and selenoamides can act as stronger hydrogen‐bond donors than of carboxamides, despite the lower electronegativity of S and Se. This phenomenon has been experimentally explored, particularly in organocatalysis, but a sound electronic explanation is lacking. Our quantum chemical investigations show that the NH(2) groups in thio‐ and selenoamides are more positively charged than in carboxamides. This originates from the larger electronic density flow from the nitrogen lone pair of the NH(2) group towards the lower‐lying π*(C=S) and π*(C=Se) orbitals than to the high‐lying π*(C=O) orbital. The relative energies of the π* orbitals result from the overlap between the chalcogen np and carbon 2p atomic orbitals, which is set by the carbon‐chalcogen equilibrium distance, a consequence of the Pauli repulsion between the two bonded atoms. Thus, neither the electronegativity nor the often‐suggested polarizability but the steric size of the chalcogen atom determines the amide's hydrogen‐bond donor capability.
format Online
Article
Text
id pubmed-9324920
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-93249202022-07-30 How the Chalcogen Atom Size Dictates the Hydrogen‐Bond Donor Capability of Carboxamides, Thioamides, and Selenoamides Nieuwland, Celine Fonseca Guerra, Célia Chemistry Research Articles The amino groups of thio‐ and selenoamides can act as stronger hydrogen‐bond donors than of carboxamides, despite the lower electronegativity of S and Se. This phenomenon has been experimentally explored, particularly in organocatalysis, but a sound electronic explanation is lacking. Our quantum chemical investigations show that the NH(2) groups in thio‐ and selenoamides are more positively charged than in carboxamides. This originates from the larger electronic density flow from the nitrogen lone pair of the NH(2) group towards the lower‐lying π*(C=S) and π*(C=Se) orbitals than to the high‐lying π*(C=O) orbital. The relative energies of the π* orbitals result from the overlap between the chalcogen np and carbon 2p atomic orbitals, which is set by the carbon‐chalcogen equilibrium distance, a consequence of the Pauli repulsion between the two bonded atoms. Thus, neither the electronegativity nor the often‐suggested polarizability but the steric size of the chalcogen atom determines the amide's hydrogen‐bond donor capability. John Wiley and Sons Inc. 2022-04-26 2022-06-01 /pmc/articles/PMC9324920/ /pubmed/35322485 http://dx.doi.org/10.1002/chem.202200755 Text en © 2022 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Nieuwland, Celine
Fonseca Guerra, Célia
How the Chalcogen Atom Size Dictates the Hydrogen‐Bond Donor Capability of Carboxamides, Thioamides, and Selenoamides
title How the Chalcogen Atom Size Dictates the Hydrogen‐Bond Donor Capability of Carboxamides, Thioamides, and Selenoamides
title_full How the Chalcogen Atom Size Dictates the Hydrogen‐Bond Donor Capability of Carboxamides, Thioamides, and Selenoamides
title_fullStr How the Chalcogen Atom Size Dictates the Hydrogen‐Bond Donor Capability of Carboxamides, Thioamides, and Selenoamides
title_full_unstemmed How the Chalcogen Atom Size Dictates the Hydrogen‐Bond Donor Capability of Carboxamides, Thioamides, and Selenoamides
title_short How the Chalcogen Atom Size Dictates the Hydrogen‐Bond Donor Capability of Carboxamides, Thioamides, and Selenoamides
title_sort how the chalcogen atom size dictates the hydrogen‐bond donor capability of carboxamides, thioamides, and selenoamides
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9324920/
https://www.ncbi.nlm.nih.gov/pubmed/35322485
http://dx.doi.org/10.1002/chem.202200755
work_keys_str_mv AT nieuwlandceline howthechalcogenatomsizedictatesthehydrogenbonddonorcapabilityofcarboxamidesthioamidesandselenoamides
AT fonsecaguerracelia howthechalcogenatomsizedictatesthehydrogenbonddonorcapabilityofcarboxamidesthioamidesandselenoamides