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The Cerebellar Gene Database: a Collective Database of Genes Critical for Cerebellar Development

This report presents the first comprehensive database that specifically compiles genes critical for cerebellar development and function. The Cerebellar Gene Database details genes that, when perturbed in mouse models, result in a cerebellar phenotype according to available data from both Mouse Genom...

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Autores principales: Ramirez, Miguel, Wu, Joshua, Liu, Matthew, Wu, Derek, Weeden, Dave, Goldowitz, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9325837/
https://www.ncbi.nlm.nih.gov/pubmed/35857265
http://dx.doi.org/10.1007/s12311-022-01445-w
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author Ramirez, Miguel
Wu, Joshua
Liu, Matthew
Wu, Derek
Weeden, Dave
Goldowitz, Daniel
author_facet Ramirez, Miguel
Wu, Joshua
Liu, Matthew
Wu, Derek
Weeden, Dave
Goldowitz, Daniel
author_sort Ramirez, Miguel
collection PubMed
description This report presents the first comprehensive database that specifically compiles genes critical for cerebellar development and function. The Cerebellar Gene Database details genes that, when perturbed in mouse models, result in a cerebellar phenotype according to available data from both Mouse Genome Informatics and PubMed, as well as references to the corresponding studies for further examination. This database also offers a compilation of human genetic disorders with a cerebellar phenotype and their associated gene information from the Online Mendelian Inheritance in Man (OMIM) database. By comparing and contrasting the mouse and human datasets, we observe that only a small proportion of human mutant genes with a cerebellar phenotype have been studied in mouse knockout models. Given the highly conserved nature between mouse and human genomes, this surprising finding highlights how mouse genetic models can be more frequently employed to elucidate human disease etiology. On the other hand, many mouse genes identified in the present study that are known to lead to a cerebellar phenotype when perturbed have not yet been found to be pathogenic in the cerebellum of humans. This database furthers our understanding of human cerebellar disorders with yet-to-be-identified genetic causes. It is our hope that this gene database will serve as an invaluable tool for gathering background information, generating hypotheses, and facilitating translational research endeavors. Moreover, we encourage continual inputs from the research community in making this compilation a living database, one that remains up-to-date with the advances in cerebellar research. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12311-022-01445-w.
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spelling pubmed-93258372022-07-28 The Cerebellar Gene Database: a Collective Database of Genes Critical for Cerebellar Development Ramirez, Miguel Wu, Joshua Liu, Matthew Wu, Derek Weeden, Dave Goldowitz, Daniel Cerebellum Original Article This report presents the first comprehensive database that specifically compiles genes critical for cerebellar development and function. The Cerebellar Gene Database details genes that, when perturbed in mouse models, result in a cerebellar phenotype according to available data from both Mouse Genome Informatics and PubMed, as well as references to the corresponding studies for further examination. This database also offers a compilation of human genetic disorders with a cerebellar phenotype and their associated gene information from the Online Mendelian Inheritance in Man (OMIM) database. By comparing and contrasting the mouse and human datasets, we observe that only a small proportion of human mutant genes with a cerebellar phenotype have been studied in mouse knockout models. Given the highly conserved nature between mouse and human genomes, this surprising finding highlights how mouse genetic models can be more frequently employed to elucidate human disease etiology. On the other hand, many mouse genes identified in the present study that are known to lead to a cerebellar phenotype when perturbed have not yet been found to be pathogenic in the cerebellum of humans. This database furthers our understanding of human cerebellar disorders with yet-to-be-identified genetic causes. It is our hope that this gene database will serve as an invaluable tool for gathering background information, generating hypotheses, and facilitating translational research endeavors. Moreover, we encourage continual inputs from the research community in making this compilation a living database, one that remains up-to-date with the advances in cerebellar research. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12311-022-01445-w. Springer US 2022-07-20 2022 /pmc/articles/PMC9325837/ /pubmed/35857265 http://dx.doi.org/10.1007/s12311-022-01445-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Ramirez, Miguel
Wu, Joshua
Liu, Matthew
Wu, Derek
Weeden, Dave
Goldowitz, Daniel
The Cerebellar Gene Database: a Collective Database of Genes Critical for Cerebellar Development
title The Cerebellar Gene Database: a Collective Database of Genes Critical for Cerebellar Development
title_full The Cerebellar Gene Database: a Collective Database of Genes Critical for Cerebellar Development
title_fullStr The Cerebellar Gene Database: a Collective Database of Genes Critical for Cerebellar Development
title_full_unstemmed The Cerebellar Gene Database: a Collective Database of Genes Critical for Cerebellar Development
title_short The Cerebellar Gene Database: a Collective Database of Genes Critical for Cerebellar Development
title_sort cerebellar gene database: a collective database of genes critical for cerebellar development
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9325837/
https://www.ncbi.nlm.nih.gov/pubmed/35857265
http://dx.doi.org/10.1007/s12311-022-01445-w
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