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Necroptosis-Related Genes Signatures Identified Molecular Subtypes and Underlying Mechanisms in Hepatocellular Carcinoma

BACKGROUND: Although emerging evidence supports the relationship between necroptosis (NEC) related genes and hepatocellular carcinoma (HCC), the contribution of these necroptosis-related genes to the development, prognosis, and immunotherapy of HCC is unclear. METHODS: The expression of genes and re...

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Autores principales: Wei, Jianguo, Hou, Shuqian, Li, Minhua, Yao, Xiaofei, Wang, Li, Zheng, Zhen, Mo, Haiqian, Chen, Yu, Yuan, Xiaolu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9326098/
https://www.ncbi.nlm.nih.gov/pubmed/35912224
http://dx.doi.org/10.3389/fonc.2022.875264
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author Wei, Jianguo
Hou, Shuqian
Li, Minhua
Yao, Xiaofei
Wang, Li
Zheng, Zhen
Mo, Haiqian
Chen, Yu
Yuan, Xiaolu
author_facet Wei, Jianguo
Hou, Shuqian
Li, Minhua
Yao, Xiaofei
Wang, Li
Zheng, Zhen
Mo, Haiqian
Chen, Yu
Yuan, Xiaolu
author_sort Wei, Jianguo
collection PubMed
description BACKGROUND: Although emerging evidence supports the relationship between necroptosis (NEC) related genes and hepatocellular carcinoma (HCC), the contribution of these necroptosis-related genes to the development, prognosis, and immunotherapy of HCC is unclear. METHODS: The expression of genes and relevant clinical information were downloaded from TCGA-LIHC, LIRI-JP, GSE14520/NCI, GSE36376, GSE76427, GSE20140, GSE27150, and IMvigor210 datasets. Next, we used an unsupervised clustering method to assign the samples into phenotype clusters base on 15 necroptosis-related genes. Subsequently, we constructed a NEC score based on NEC phenotype-related prognostic genes to quantify the necroptosis related subtypes of individual patients. RESULTS: We divided the samples into the high and low NEC score groups, and the high NEC score showed a poor prognosis. Simultaneously, NEC score is an effective and stable model and had a good performance in predicting the prognosis of HCC patients. A high NEC score was characterized by activation of the stroma and increased levels of immune infiltration. A high NEC score was also related to low expression of immune checkpoint molecules (PD-1/PD-L1). Importantly, the established NEC score would contribute to predicting the response to anti-PD-1/L1 immunotherapy. CONCLUSIONS: Our study provide a comprehensive analysis of necroptosis-related genes in HCC. Stratification based on the NEC score may enable HCC patients to benefit more from immunotherapy and help identify new cancer treatment strategies.
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spelling pubmed-93260982022-07-28 Necroptosis-Related Genes Signatures Identified Molecular Subtypes and Underlying Mechanisms in Hepatocellular Carcinoma Wei, Jianguo Hou, Shuqian Li, Minhua Yao, Xiaofei Wang, Li Zheng, Zhen Mo, Haiqian Chen, Yu Yuan, Xiaolu Front Oncol Oncology BACKGROUND: Although emerging evidence supports the relationship between necroptosis (NEC) related genes and hepatocellular carcinoma (HCC), the contribution of these necroptosis-related genes to the development, prognosis, and immunotherapy of HCC is unclear. METHODS: The expression of genes and relevant clinical information were downloaded from TCGA-LIHC, LIRI-JP, GSE14520/NCI, GSE36376, GSE76427, GSE20140, GSE27150, and IMvigor210 datasets. Next, we used an unsupervised clustering method to assign the samples into phenotype clusters base on 15 necroptosis-related genes. Subsequently, we constructed a NEC score based on NEC phenotype-related prognostic genes to quantify the necroptosis related subtypes of individual patients. RESULTS: We divided the samples into the high and low NEC score groups, and the high NEC score showed a poor prognosis. Simultaneously, NEC score is an effective and stable model and had a good performance in predicting the prognosis of HCC patients. A high NEC score was characterized by activation of the stroma and increased levels of immune infiltration. A high NEC score was also related to low expression of immune checkpoint molecules (PD-1/PD-L1). Importantly, the established NEC score would contribute to predicting the response to anti-PD-1/L1 immunotherapy. CONCLUSIONS: Our study provide a comprehensive analysis of necroptosis-related genes in HCC. Stratification based on the NEC score may enable HCC patients to benefit more from immunotherapy and help identify new cancer treatment strategies. Frontiers Media S.A. 2022-07-13 /pmc/articles/PMC9326098/ /pubmed/35912224 http://dx.doi.org/10.3389/fonc.2022.875264 Text en Copyright © 2022 Wei, Hou, Li, Yao, Wang, Zheng, Mo, Chen and Yuan https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Wei, Jianguo
Hou, Shuqian
Li, Minhua
Yao, Xiaofei
Wang, Li
Zheng, Zhen
Mo, Haiqian
Chen, Yu
Yuan, Xiaolu
Necroptosis-Related Genes Signatures Identified Molecular Subtypes and Underlying Mechanisms in Hepatocellular Carcinoma
title Necroptosis-Related Genes Signatures Identified Molecular Subtypes and Underlying Mechanisms in Hepatocellular Carcinoma
title_full Necroptosis-Related Genes Signatures Identified Molecular Subtypes and Underlying Mechanisms in Hepatocellular Carcinoma
title_fullStr Necroptosis-Related Genes Signatures Identified Molecular Subtypes and Underlying Mechanisms in Hepatocellular Carcinoma
title_full_unstemmed Necroptosis-Related Genes Signatures Identified Molecular Subtypes and Underlying Mechanisms in Hepatocellular Carcinoma
title_short Necroptosis-Related Genes Signatures Identified Molecular Subtypes and Underlying Mechanisms in Hepatocellular Carcinoma
title_sort necroptosis-related genes signatures identified molecular subtypes and underlying mechanisms in hepatocellular carcinoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9326098/
https://www.ncbi.nlm.nih.gov/pubmed/35912224
http://dx.doi.org/10.3389/fonc.2022.875264
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