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Dissecting the Mechanism of the Nonheme Iron Endoperoxidase FtmOx1 Using Substrate Analogues
[Image: see text] FtmOx1 is a nonheme iron (NHFe) endoperoxidase, catalyzing three disparate reactions, endoperoxidation, alcohol dehydrogenation, and dealkylation, under in vitro conditions; the diversity complicates its mechanistic studies. In this study, we use two substrate analogues to simplify...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9326825/ https://www.ncbi.nlm.nih.gov/pubmed/35911443 http://dx.doi.org/10.1021/jacsau.2c00248 |
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author | Zhu, Guoliang Yan, Wupeng Wang, Xinye Cheng, Ronghai Naowarojna, Nathchar Wang, Kun Wang, Jun Song, Heng Wang, Yuyang Liu, Hairong Xia, Xuekui Costello, Catherine E. Liu, Xueting Zhang, Lixin Liu, Pinghua |
author_facet | Zhu, Guoliang Yan, Wupeng Wang, Xinye Cheng, Ronghai Naowarojna, Nathchar Wang, Kun Wang, Jun Song, Heng Wang, Yuyang Liu, Hairong Xia, Xuekui Costello, Catherine E. Liu, Xueting Zhang, Lixin Liu, Pinghua |
author_sort | Zhu, Guoliang |
collection | PubMed |
description | [Image: see text] FtmOx1 is a nonheme iron (NHFe) endoperoxidase, catalyzing three disparate reactions, endoperoxidation, alcohol dehydrogenation, and dealkylation, under in vitro conditions; the diversity complicates its mechanistic studies. In this study, we use two substrate analogues to simplify the FtmOx1-catalyzed reaction to either a dealkylation or an alcohol dehydrogenation reaction for structure–function relationship analysis to address two key FtmOx1 mechanistic questions: (1) Y224 flipping in the proposed COX-like model vs α-ketoglutarate (αKG) rotation proposed in the CarC-like mechanistic model and (2) the involvement of a Y224 radical (COX-like model) or a Y68 radical (CarC-like model) in FtmOx1-catalysis. When 13-oxo-fumitremorgin B (7) is used as the substrate, FtmOx1-catalysis changes from the endoperoxidation to a hydroxylation reaction and leads to dealkylation. In addition, consistent with the dealkylation side-reaction in the COX-like model prediction, the X-ray structure of the FtmOx1•Co(II)•αKG•7 ternary complex reveals a flip of Y224 to an alternative conformation relative to the FtmOx1•Fe(II)•αKG binary complex. Verruculogen (2) was used as a second substrate analogue to study the alcohol dehydrogenation reaction to examine the involvement of the Y224 radical or Y68 radical in FtmOx1-catalysis, and again, the results from the verruculogen reaction are more consistent with the COX-like model. |
format | Online Article Text |
id | pubmed-9326825 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-93268252022-07-28 Dissecting the Mechanism of the Nonheme Iron Endoperoxidase FtmOx1 Using Substrate Analogues Zhu, Guoliang Yan, Wupeng Wang, Xinye Cheng, Ronghai Naowarojna, Nathchar Wang, Kun Wang, Jun Song, Heng Wang, Yuyang Liu, Hairong Xia, Xuekui Costello, Catherine E. Liu, Xueting Zhang, Lixin Liu, Pinghua JACS Au [Image: see text] FtmOx1 is a nonheme iron (NHFe) endoperoxidase, catalyzing three disparate reactions, endoperoxidation, alcohol dehydrogenation, and dealkylation, under in vitro conditions; the diversity complicates its mechanistic studies. In this study, we use two substrate analogues to simplify the FtmOx1-catalyzed reaction to either a dealkylation or an alcohol dehydrogenation reaction for structure–function relationship analysis to address two key FtmOx1 mechanistic questions: (1) Y224 flipping in the proposed COX-like model vs α-ketoglutarate (αKG) rotation proposed in the CarC-like mechanistic model and (2) the involvement of a Y224 radical (COX-like model) or a Y68 radical (CarC-like model) in FtmOx1-catalysis. When 13-oxo-fumitremorgin B (7) is used as the substrate, FtmOx1-catalysis changes from the endoperoxidation to a hydroxylation reaction and leads to dealkylation. In addition, consistent with the dealkylation side-reaction in the COX-like model prediction, the X-ray structure of the FtmOx1•Co(II)•αKG•7 ternary complex reveals a flip of Y224 to an alternative conformation relative to the FtmOx1•Fe(II)•αKG binary complex. Verruculogen (2) was used as a second substrate analogue to study the alcohol dehydrogenation reaction to examine the involvement of the Y224 radical or Y68 radical in FtmOx1-catalysis, and again, the results from the verruculogen reaction are more consistent with the COX-like model. American Chemical Society 2022-06-10 /pmc/articles/PMC9326825/ /pubmed/35911443 http://dx.doi.org/10.1021/jacsau.2c00248 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Zhu, Guoliang Yan, Wupeng Wang, Xinye Cheng, Ronghai Naowarojna, Nathchar Wang, Kun Wang, Jun Song, Heng Wang, Yuyang Liu, Hairong Xia, Xuekui Costello, Catherine E. Liu, Xueting Zhang, Lixin Liu, Pinghua Dissecting the Mechanism of the Nonheme Iron Endoperoxidase FtmOx1 Using Substrate Analogues |
title | Dissecting the Mechanism of the Nonheme Iron Endoperoxidase
FtmOx1 Using Substrate Analogues |
title_full | Dissecting the Mechanism of the Nonheme Iron Endoperoxidase
FtmOx1 Using Substrate Analogues |
title_fullStr | Dissecting the Mechanism of the Nonheme Iron Endoperoxidase
FtmOx1 Using Substrate Analogues |
title_full_unstemmed | Dissecting the Mechanism of the Nonheme Iron Endoperoxidase
FtmOx1 Using Substrate Analogues |
title_short | Dissecting the Mechanism of the Nonheme Iron Endoperoxidase
FtmOx1 Using Substrate Analogues |
title_sort | dissecting the mechanism of the nonheme iron endoperoxidase
ftmox1 using substrate analogues |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9326825/ https://www.ncbi.nlm.nih.gov/pubmed/35911443 http://dx.doi.org/10.1021/jacsau.2c00248 |
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