Cargando…

IDPsBind: a repository of binding sites for intrinsically disordered proteins complexes with known 3D structures

BACKGROUND: Intrinsically disordered proteins (IDPs) lack a stable three-dimensional structure under physiological conditions but play crucial roles in many biological processes. Intrinsically disordered proteins perform various biological functions by interacting with other ligands. RESULTS: Here,...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sun, CanZhuang, Feng, YongE, Fan, GuoLiang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2022
Materias:	Database
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9327236/ https://www.ncbi.nlm.nih.gov/pubmed/35883018 http://dx.doi.org/10.1186/s12860-022-00434-5

Ejemplares similares

DisBind: A database of classified functional binding sites in disordered and structured regions of intrinsically disordered proteins
por: Yu, Jia-Feng, et al.
Publicado: (2017)

Intrinsically disordered proteins (IDPs) in trypanosomatids
por: Ruy, Patrícia de Cássia, et al.
Publicado: (2014)

EcRBPome: a comprehensive database of all known E. coli RNA-binding proteins
por: Ghosh, Pritha, et al.
Publicado: (2019)

PSnpBind: a database of mutated binding site protein–ligand complexes constructed using a multithreaded virtual screening workflow
por: Ammar, Ammar, et al.
Publicado: (2022)

MIBiG 2.0: a repository for biosynthetic gene clusters of known function
por: Kautsar, Satria A, et al.
Publicado: (2020)

Domain-based small molecule binding site annotation
por: Snyder, Kevin A, et al.
Publicado: (2006)

Physicochemical Properties of Cells and Their Effects on Intrinsically Disordered Proteins (IDPs)
por: Theillet, Francois-Xavier, et al.
Publicado: (2014)

Unreported intrinsic disorder in proteins: Building connections to the literature on IDPs
por: Uversky, Vladimir N
Publicado: (2014)

NeProc predicts binding segments in intrinsically disordered regions without learning binding region sequences
por: Anbo, Hiroto, et al.
Publicado: (2020)

Novel Strategies for Drug Discovery Based on Intrinsically Disordered Proteins (IDPs)
por: Wang, Jihua, et al.
Publicado: (2011)

Impact of aromatic residues on the intrinsic disorder and transitional behaviour of model IDPs
por: García-Arévalo, C., et al.
Publicado: (2022)

TmaDB: a repository for tissue microarray data
por: Sharma-Oates, Archana, et al.
Publicado: (2005)

Collembase: a repository for springtail genomics and soil quality assessment
por: Timmermans, Martijn JTN, et al.
Publicado: (2007)

StreptomycesInforSys: A web-enabled information repository
por: Jain, Chakresh Kumar, et al.
Publicado: (2012)

NIDDK data repository: a central collection of clinical trial data
por: Cuticchia, A Jamie, et al.
Publicado: (2006)

Genome Warehouse: A Public Repository Housing Genome-scale Data
por: Chen, Meili, et al.
Publicado: (2021)

Lantern: an integrative repository of functional annotations for lncRNAs in the human genome
por: Daulatabad, Swapna Vidhur, et al.
Publicado: (2021)

Galbase: a comprehensive repository for integrating chicken multi-omics data
por: Fu, Weiwei, et al.
Publicado: (2022)

SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes
por: Mulugeta, Teshome Dagne, et al.
Publicado: (2019)

New Jersey Center for Tourette Syndrome Sharing Repository: methods and sample description
por: Heiman, Gary A, et al.
Publicado: (2008)

Leveraging healthcare utilization to explore outcomes from musculoskeletal disorders: methodology for defining relevant variables from a health services data repository
por: Rhon, Daniel I., et al.
Publicado: (2018)

IDP–CRF: Intrinsically Disordered Protein/Region Identification Based on Conditional Random Fields
por: Liu, Yumeng, et al.
Publicado: (2018)

MicroarrayDesigner: an online search tool and repository for near-optimal microarray experimental designs
por: Sacan, Ahmet, et al.
Publicado: (2009)

ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana
por: Hazarika, Rashmi R., et al.
Publicado: (2017)

OGP: A Repository of Experimentally Characterized O-glycoproteins to Facilitate Studies on O-glycosylation
por: Huang, Jiangming, et al.
Publicado: (2021)

DIBS: a repository of disordered binding sites mediating interactions with ordered proteins
por: Schad, Eva, et al.
Publicado: (2018)

The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images
por: Riffle, Michael, et al.
Publicado: (2010)

Ssa miRNAs DB: Online repository of in silico predicted miRNAs in Salmo salar
por: Reyes, Daniela, et al.
Publicado: (2012)

QSAR DataBank repository: open and linked qualitative and quantitative structure–activity relationship models
por: Ruusmann, V, et al.
Publicado: (2015)

Autism genetic database (AGD): a comprehensive database including autism susceptibility gene-CNVs integrated with known noncoding RNAs and fragile sites
por: Matuszek, Gregory, et al.
Publicado: (2009)

KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems
por: Costa, Rafael S, et al.
Publicado: (2014)

SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling
por: Li, Yanyan, et al.
Publicado: (2021)

ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins
por: Tamiola, Kamil, et al.
Publicado: (2011)

DichroIDP: a method for analyses of intrinsically disordered proteins using circular dichroism spectroscopy
por: Miles, Andrew J., et al.
Publicado: (2023)

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
por: Kulakovskiy, Ivan V., et al.
Publicado: (2016)

The SWISS-MODEL Repository—new features and functionality
por: Bienert, Stefan, et al.
Publicado: (2017)

mutLBSgeneDB: mutated ligand binding site gene DataBase
por: Kim, Pora, et al.
Publicado: (2017)

HProteome-BSite: predicted binding sites and ligands in human 3D proteome
por: Sim, Jiho, et al.
Publicado: (2022)

The Addgene repository: an international nonprofit plasmid and data resource
por: Kamens, Joanne
Publicado: (2014)

SBR-Blood: systems biology repository for hematopoietic cells
por: Lichtenberg, Jens, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_ud24sb80s9iivd3avm20bnrjrt