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Predicting clinical outcomes in COVID-19 using radiomics on chest radiographs
OBJECTIVES: For optimal utilization of healthcare resources, there is a critical need for early identification of COVID-19 patients at risk of poor prognosis as defined by the need for intensive unit care and mechanical ventilation. We tested the feasibility of chest X-ray (CXR)-based radiomics metr...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The British Institute of Radiology.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9328073/ https://www.ncbi.nlm.nih.gov/pubmed/34520246 http://dx.doi.org/10.1259/bjr.20210221 |
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author | Varghese, Bino Abel Shin, Heeseop Desai, Bhushan Gholamrezanezhad, Ali Lei, Xiaomeng Perkins, Melissa Oberai, Assad Nanda, Neha Cen, Steven Duddalwar, Vinay |
author_facet | Varghese, Bino Abel Shin, Heeseop Desai, Bhushan Gholamrezanezhad, Ali Lei, Xiaomeng Perkins, Melissa Oberai, Assad Nanda, Neha Cen, Steven Duddalwar, Vinay |
author_sort | Varghese, Bino Abel |
collection | PubMed |
description | OBJECTIVES: For optimal utilization of healthcare resources, there is a critical need for early identification of COVID-19 patients at risk of poor prognosis as defined by the need for intensive unit care and mechanical ventilation. We tested the feasibility of chest X-ray (CXR)-based radiomics metrics to develop machine-learning algorithms for predicting patients with poor outcomes. METHODS: In this Institutional Review Board (IRB) approved, Health Insurance Portability and Accountability Act (HIPAA) compliant, retrospective study, we evaluated CXRs performed around the time of admission from 167 COVID-19 patients. Of the 167 patients, 68 (40.72%) required intensive care during their stay, 45 (26.95%) required intubation, and 25 (14.97%) died. Lung opacities were manually segmented using ITK-SNAP (open-source software). CaPTk (open-source software) was used to perform 2D radiomics analysis. RESULTS: Of all the algorithms considered, the AdaBoost classifier performed the best with AUC = 0.72 to predict the need for intubation, AUC = 0.71 to predict death, and AUC = 0.61 to predict the need for admission to the intensive care unit (ICU). AdaBoost had similar performance with ElasticNet in predicting the need for admission to ICU. Analysis of the key radiomic metrics that drive model prediction and performance showed the importance of first-order texture metrics compared to other radiomics panel metrics. Using a Venn-diagram analysis, two first-order texture metrics and one second-order texture metric that consistently played an important role in driving model performance in all three outcome predictions were identified. CONCLUSIONS: Considering the quantitative nature and reliability of radiomic metrics, they can be used prospectively as prognostic markers to individualize treatment plans for COVID-19 patients and also assist with healthcare resource management. ADVANCES IN KNOWLEDGE: We report on the performance of CXR-based imaging metrics extracted from RT-PCR positive COVID-19 patients at admission to develop machine-learning algorithms for predicting the need for ICU, the need for intubation, and mortality, respectively. |
format | Online Article Text |
id | pubmed-9328073 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The British Institute of Radiology. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93280732022-08-05 Predicting clinical outcomes in COVID-19 using radiomics on chest radiographs Varghese, Bino Abel Shin, Heeseop Desai, Bhushan Gholamrezanezhad, Ali Lei, Xiaomeng Perkins, Melissa Oberai, Assad Nanda, Neha Cen, Steven Duddalwar, Vinay Br J Radiol Full Paper OBJECTIVES: For optimal utilization of healthcare resources, there is a critical need for early identification of COVID-19 patients at risk of poor prognosis as defined by the need for intensive unit care and mechanical ventilation. We tested the feasibility of chest X-ray (CXR)-based radiomics metrics to develop machine-learning algorithms for predicting patients with poor outcomes. METHODS: In this Institutional Review Board (IRB) approved, Health Insurance Portability and Accountability Act (HIPAA) compliant, retrospective study, we evaluated CXRs performed around the time of admission from 167 COVID-19 patients. Of the 167 patients, 68 (40.72%) required intensive care during their stay, 45 (26.95%) required intubation, and 25 (14.97%) died. Lung opacities were manually segmented using ITK-SNAP (open-source software). CaPTk (open-source software) was used to perform 2D radiomics analysis. RESULTS: Of all the algorithms considered, the AdaBoost classifier performed the best with AUC = 0.72 to predict the need for intubation, AUC = 0.71 to predict death, and AUC = 0.61 to predict the need for admission to the intensive care unit (ICU). AdaBoost had similar performance with ElasticNet in predicting the need for admission to ICU. Analysis of the key radiomic metrics that drive model prediction and performance showed the importance of first-order texture metrics compared to other radiomics panel metrics. Using a Venn-diagram analysis, two first-order texture metrics and one second-order texture metric that consistently played an important role in driving model performance in all three outcome predictions were identified. CONCLUSIONS: Considering the quantitative nature and reliability of radiomic metrics, they can be used prospectively as prognostic markers to individualize treatment plans for COVID-19 patients and also assist with healthcare resource management. ADVANCES IN KNOWLEDGE: We report on the performance of CXR-based imaging metrics extracted from RT-PCR positive COVID-19 patients at admission to develop machine-learning algorithms for predicting the need for ICU, the need for intubation, and mortality, respectively. The British Institute of Radiology. 2021-10-01 2022-07-08 /pmc/articles/PMC9328073/ /pubmed/34520246 http://dx.doi.org/10.1259/bjr.20210221 Text en © 2021 The Authors. Published by the British Institute of Radiology https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution 4.0 Unported License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Full Paper Varghese, Bino Abel Shin, Heeseop Desai, Bhushan Gholamrezanezhad, Ali Lei, Xiaomeng Perkins, Melissa Oberai, Assad Nanda, Neha Cen, Steven Duddalwar, Vinay Predicting clinical outcomes in COVID-19 using radiomics on chest radiographs |
title | Predicting clinical outcomes in COVID-19 using radiomics on chest radiographs |
title_full | Predicting clinical outcomes in COVID-19 using radiomics on chest radiographs |
title_fullStr | Predicting clinical outcomes in COVID-19 using radiomics on chest radiographs |
title_full_unstemmed | Predicting clinical outcomes in COVID-19 using radiomics on chest radiographs |
title_short | Predicting clinical outcomes in COVID-19 using radiomics on chest radiographs |
title_sort | predicting clinical outcomes in covid-19 using radiomics on chest radiographs |
topic | Full Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9328073/ https://www.ncbi.nlm.nih.gov/pubmed/34520246 http://dx.doi.org/10.1259/bjr.20210221 |
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