Cargando…
The impact of inter-observer variation in delineation on robustness of radiomics features in non-small cell lung cancer
Artificial intelligence and radiomics have the potential to revolutionise cancer prognostication and personalised treatment. Manual outlining of the tumour volume for extraction of radiomics features (RF) is a subjective process. This study investigates robustness of RF to inter-observer variation (...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9329346/ https://www.ncbi.nlm.nih.gov/pubmed/35896707 http://dx.doi.org/10.1038/s41598-022-16520-9 |
_version_ | 1784757900821921792 |
---|---|
author | Kothari, Gargi Woon, Beverley Patrick, Cameron J. Korte, James Wee, Leonard Hanna, Gerard G. Kron, Tomas Hardcastle, Nicholas Siva, Shankar |
author_facet | Kothari, Gargi Woon, Beverley Patrick, Cameron J. Korte, James Wee, Leonard Hanna, Gerard G. Kron, Tomas Hardcastle, Nicholas Siva, Shankar |
author_sort | Kothari, Gargi |
collection | PubMed |
description | Artificial intelligence and radiomics have the potential to revolutionise cancer prognostication and personalised treatment. Manual outlining of the tumour volume for extraction of radiomics features (RF) is a subjective process. This study investigates robustness of RF to inter-observer variation (IOV) in contouring in lung cancer. We utilised two public imaging datasets: ‘NSCLC-Radiomics’ and ‘NSCLC-Radiomics-Interobserver1’ (‘Interobserver’). For ‘NSCLC-Radiomics’, we created an additional set of manual contours for 92 patients, and for ‘Interobserver’, there were five manual and five semi-automated contours available for 20 patients. Dice coefficients (DC) were calculated for contours. 1113 RF were extracted including shape, first order and texture features. Intraclass correlation coefficient (ICC) was computed to assess robustness of RF to IOV. Cox regression analysis for overall survival (OS) was performed with a previously published radiomics signature. The median DC ranged from 0.81 (‘NSCLC-Radiomics’) to 0.85 (‘Interobserver’—semi-automated). The median ICC for the ‘NSCLC-Radiomics’, ‘Interobserver’ (manual) and ‘Interobserver’ (semi-automated) were 0.90, 0.88 and 0.93 respectively. The ICC varied by feature type and was lower for first order and gray level co-occurrence matrix (GLCM) features. Shape features had a lower median ICC in the ‘NSCLC-Radiomics’ dataset compared to the ‘Interobserver’ dataset. Survival analysis showed similar separation of curves for three of four RF apart from ‘original_shape_Compactness2’, a feature with low ICC (0.61). The majority of RF are robust to IOV, with first order, GLCM and shape features being the least robust. Semi-automated contouring improves feature stability. Decreased robustness of a feature is significant as it may impact upon the features’ prognostic capability. |
format | Online Article Text |
id | pubmed-9329346 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-93293462022-07-29 The impact of inter-observer variation in delineation on robustness of radiomics features in non-small cell lung cancer Kothari, Gargi Woon, Beverley Patrick, Cameron J. Korte, James Wee, Leonard Hanna, Gerard G. Kron, Tomas Hardcastle, Nicholas Siva, Shankar Sci Rep Article Artificial intelligence and radiomics have the potential to revolutionise cancer prognostication and personalised treatment. Manual outlining of the tumour volume for extraction of radiomics features (RF) is a subjective process. This study investigates robustness of RF to inter-observer variation (IOV) in contouring in lung cancer. We utilised two public imaging datasets: ‘NSCLC-Radiomics’ and ‘NSCLC-Radiomics-Interobserver1’ (‘Interobserver’). For ‘NSCLC-Radiomics’, we created an additional set of manual contours for 92 patients, and for ‘Interobserver’, there were five manual and five semi-automated contours available for 20 patients. Dice coefficients (DC) were calculated for contours. 1113 RF were extracted including shape, first order and texture features. Intraclass correlation coefficient (ICC) was computed to assess robustness of RF to IOV. Cox regression analysis for overall survival (OS) was performed with a previously published radiomics signature. The median DC ranged from 0.81 (‘NSCLC-Radiomics’) to 0.85 (‘Interobserver’—semi-automated). The median ICC for the ‘NSCLC-Radiomics’, ‘Interobserver’ (manual) and ‘Interobserver’ (semi-automated) were 0.90, 0.88 and 0.93 respectively. The ICC varied by feature type and was lower for first order and gray level co-occurrence matrix (GLCM) features. Shape features had a lower median ICC in the ‘NSCLC-Radiomics’ dataset compared to the ‘Interobserver’ dataset. Survival analysis showed similar separation of curves for three of four RF apart from ‘original_shape_Compactness2’, a feature with low ICC (0.61). The majority of RF are robust to IOV, with first order, GLCM and shape features being the least robust. Semi-automated contouring improves feature stability. Decreased robustness of a feature is significant as it may impact upon the features’ prognostic capability. Nature Publishing Group UK 2022-07-27 /pmc/articles/PMC9329346/ /pubmed/35896707 http://dx.doi.org/10.1038/s41598-022-16520-9 Text en © Crown 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Kothari, Gargi Woon, Beverley Patrick, Cameron J. Korte, James Wee, Leonard Hanna, Gerard G. Kron, Tomas Hardcastle, Nicholas Siva, Shankar The impact of inter-observer variation in delineation on robustness of radiomics features in non-small cell lung cancer |
title | The impact of inter-observer variation in delineation on robustness of radiomics features in non-small cell lung cancer |
title_full | The impact of inter-observer variation in delineation on robustness of radiomics features in non-small cell lung cancer |
title_fullStr | The impact of inter-observer variation in delineation on robustness of radiomics features in non-small cell lung cancer |
title_full_unstemmed | The impact of inter-observer variation in delineation on robustness of radiomics features in non-small cell lung cancer |
title_short | The impact of inter-observer variation in delineation on robustness of radiomics features in non-small cell lung cancer |
title_sort | impact of inter-observer variation in delineation on robustness of radiomics features in non-small cell lung cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9329346/ https://www.ncbi.nlm.nih.gov/pubmed/35896707 http://dx.doi.org/10.1038/s41598-022-16520-9 |
work_keys_str_mv | AT kotharigargi theimpactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT woonbeverley theimpactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT patrickcameronj theimpactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT kortejames theimpactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT weeleonard theimpactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT hannagerardg theimpactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT krontomas theimpactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT hardcastlenicholas theimpactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT sivashankar theimpactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT kotharigargi impactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT woonbeverley impactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT patrickcameronj impactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT kortejames impactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT weeleonard impactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT hannagerardg impactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT krontomas impactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT hardcastlenicholas impactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer AT sivashankar impactofinterobservervariationindelineationonrobustnessofradiomicsfeaturesinnonsmallcelllungcancer |