Cargando…

EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks

The increasing capacity of today’s technology represents great advances in diagnosing diseases using standard procedures supported by computer science. Deep learning techniques are able to extract the characteristics of temporal signals to study their patterns and diagnose diseases such as essential...

Descripción completa

Detalles Bibliográficos
Autores principales: Otero, José Fernando Adrán, López-de-Ipina, Karmele, Caballer, Oscar Solans, Marti-Puig, Pere, Sánchez-Méndez, José Ignacio, Iradi, Jon, Bergareche, Alberto, Solé-Casals, Jordi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9329364/
https://www.ncbi.nlm.nih.gov/pubmed/35896618
http://dx.doi.org/10.1038/s41598-022-16741-y
_version_ 1784757904373448704
author Otero, José Fernando Adrán
López-de-Ipina, Karmele
Caballer, Oscar Solans
Marti-Puig, Pere
Sánchez-Méndez, José Ignacio
Iradi, Jon
Bergareche, Alberto
Solé-Casals, Jordi
author_facet Otero, José Fernando Adrán
López-de-Ipina, Karmele
Caballer, Oscar Solans
Marti-Puig, Pere
Sánchez-Méndez, José Ignacio
Iradi, Jon
Bergareche, Alberto
Solé-Casals, Jordi
author_sort Otero, José Fernando Adrán
collection PubMed
description The increasing capacity of today’s technology represents great advances in diagnosing diseases using standard procedures supported by computer science. Deep learning techniques are able to extract the characteristics of temporal signals to study their patterns and diagnose diseases such as essential tremor. However, these techniques require a large amount of data to train the neural network and achieve good results, and the more data the network has, the more accurate the final model implemented. In this work we propose the use of a data augmentation technique to improve the accuracy of a Long short-term memory system in the diagnosis of essential tremor. For this purpose, the multivariate Empirical Mode Decomposition method will be used to decompose the original temporal signals collected from control subjects and patients with essential tremor. The time series obtained from the decomposition, covering different frequency ranges, will be randomly shuffled and combined to generate new artificial samples for each group. Then, both the generated artificial samples and part of the real samples will be used to train the LSTM network, and the remaining original samples will be used to test the model. The experimental results demonstrate the capability of the proposed method, which is compared to a set of 10 different data augmentation methods, and in all cases outperforms all other methods. In the best case, the proposed method increases the accuracy of the classifier from 83.20% to almost 93% when artificial samples are generated, which is a promising result when only small databases are available.
format Online
Article
Text
id pubmed-9329364
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-93293642022-07-29 EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks Otero, José Fernando Adrán López-de-Ipina, Karmele Caballer, Oscar Solans Marti-Puig, Pere Sánchez-Méndez, José Ignacio Iradi, Jon Bergareche, Alberto Solé-Casals, Jordi Sci Rep Article The increasing capacity of today’s technology represents great advances in diagnosing diseases using standard procedures supported by computer science. Deep learning techniques are able to extract the characteristics of temporal signals to study their patterns and diagnose diseases such as essential tremor. However, these techniques require a large amount of data to train the neural network and achieve good results, and the more data the network has, the more accurate the final model implemented. In this work we propose the use of a data augmentation technique to improve the accuracy of a Long short-term memory system in the diagnosis of essential tremor. For this purpose, the multivariate Empirical Mode Decomposition method will be used to decompose the original temporal signals collected from control subjects and patients with essential tremor. The time series obtained from the decomposition, covering different frequency ranges, will be randomly shuffled and combined to generate new artificial samples for each group. Then, both the generated artificial samples and part of the real samples will be used to train the LSTM network, and the remaining original samples will be used to test the model. The experimental results demonstrate the capability of the proposed method, which is compared to a set of 10 different data augmentation methods, and in all cases outperforms all other methods. In the best case, the proposed method increases the accuracy of the classifier from 83.20% to almost 93% when artificial samples are generated, which is a promising result when only small databases are available. Nature Publishing Group UK 2022-07-27 /pmc/articles/PMC9329364/ /pubmed/35896618 http://dx.doi.org/10.1038/s41598-022-16741-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Otero, José Fernando Adrán
López-de-Ipina, Karmele
Caballer, Oscar Solans
Marti-Puig, Pere
Sánchez-Méndez, José Ignacio
Iradi, Jon
Bergareche, Alberto
Solé-Casals, Jordi
EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks
title EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks
title_full EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks
title_fullStr EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks
title_full_unstemmed EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks
title_short EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks
title_sort emd-based data augmentation method applied to handwriting data for the diagnosis of essential tremor using lstm networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9329364/
https://www.ncbi.nlm.nih.gov/pubmed/35896618
http://dx.doi.org/10.1038/s41598-022-16741-y
work_keys_str_mv AT oterojosefernandoadran emdbaseddataaugmentationmethodappliedtohandwritingdataforthediagnosisofessentialtremorusinglstmnetworks
AT lopezdeipinakarmele emdbaseddataaugmentationmethodappliedtohandwritingdataforthediagnosisofessentialtremorusinglstmnetworks
AT caballeroscarsolans emdbaseddataaugmentationmethodappliedtohandwritingdataforthediagnosisofessentialtremorusinglstmnetworks
AT martipuigpere emdbaseddataaugmentationmethodappliedtohandwritingdataforthediagnosisofessentialtremorusinglstmnetworks
AT sanchezmendezjoseignacio emdbaseddataaugmentationmethodappliedtohandwritingdataforthediagnosisofessentialtremorusinglstmnetworks
AT iradijon emdbaseddataaugmentationmethodappliedtohandwritingdataforthediagnosisofessentialtremorusinglstmnetworks
AT bergarechealberto emdbaseddataaugmentationmethodappliedtohandwritingdataforthediagnosisofessentialtremorusinglstmnetworks
AT solecasalsjordi emdbaseddataaugmentationmethodappliedtohandwritingdataforthediagnosisofessentialtremorusinglstmnetworks