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EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks
The increasing capacity of today’s technology represents great advances in diagnosing diseases using standard procedures supported by computer science. Deep learning techniques are able to extract the characteristics of temporal signals to study their patterns and diagnose diseases such as essential...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9329364/ https://www.ncbi.nlm.nih.gov/pubmed/35896618 http://dx.doi.org/10.1038/s41598-022-16741-y |
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author | Otero, José Fernando Adrán López-de-Ipina, Karmele Caballer, Oscar Solans Marti-Puig, Pere Sánchez-Méndez, José Ignacio Iradi, Jon Bergareche, Alberto Solé-Casals, Jordi |
author_facet | Otero, José Fernando Adrán López-de-Ipina, Karmele Caballer, Oscar Solans Marti-Puig, Pere Sánchez-Méndez, José Ignacio Iradi, Jon Bergareche, Alberto Solé-Casals, Jordi |
author_sort | Otero, José Fernando Adrán |
collection | PubMed |
description | The increasing capacity of today’s technology represents great advances in diagnosing diseases using standard procedures supported by computer science. Deep learning techniques are able to extract the characteristics of temporal signals to study their patterns and diagnose diseases such as essential tremor. However, these techniques require a large amount of data to train the neural network and achieve good results, and the more data the network has, the more accurate the final model implemented. In this work we propose the use of a data augmentation technique to improve the accuracy of a Long short-term memory system in the diagnosis of essential tremor. For this purpose, the multivariate Empirical Mode Decomposition method will be used to decompose the original temporal signals collected from control subjects and patients with essential tremor. The time series obtained from the decomposition, covering different frequency ranges, will be randomly shuffled and combined to generate new artificial samples for each group. Then, both the generated artificial samples and part of the real samples will be used to train the LSTM network, and the remaining original samples will be used to test the model. The experimental results demonstrate the capability of the proposed method, which is compared to a set of 10 different data augmentation methods, and in all cases outperforms all other methods. In the best case, the proposed method increases the accuracy of the classifier from 83.20% to almost 93% when artificial samples are generated, which is a promising result when only small databases are available. |
format | Online Article Text |
id | pubmed-9329364 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-93293642022-07-29 EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks Otero, José Fernando Adrán López-de-Ipina, Karmele Caballer, Oscar Solans Marti-Puig, Pere Sánchez-Méndez, José Ignacio Iradi, Jon Bergareche, Alberto Solé-Casals, Jordi Sci Rep Article The increasing capacity of today’s technology represents great advances in diagnosing diseases using standard procedures supported by computer science. Deep learning techniques are able to extract the characteristics of temporal signals to study their patterns and diagnose diseases such as essential tremor. However, these techniques require a large amount of data to train the neural network and achieve good results, and the more data the network has, the more accurate the final model implemented. In this work we propose the use of a data augmentation technique to improve the accuracy of a Long short-term memory system in the diagnosis of essential tremor. For this purpose, the multivariate Empirical Mode Decomposition method will be used to decompose the original temporal signals collected from control subjects and patients with essential tremor. The time series obtained from the decomposition, covering different frequency ranges, will be randomly shuffled and combined to generate new artificial samples for each group. Then, both the generated artificial samples and part of the real samples will be used to train the LSTM network, and the remaining original samples will be used to test the model. The experimental results demonstrate the capability of the proposed method, which is compared to a set of 10 different data augmentation methods, and in all cases outperforms all other methods. In the best case, the proposed method increases the accuracy of the classifier from 83.20% to almost 93% when artificial samples are generated, which is a promising result when only small databases are available. Nature Publishing Group UK 2022-07-27 /pmc/articles/PMC9329364/ /pubmed/35896618 http://dx.doi.org/10.1038/s41598-022-16741-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Otero, José Fernando Adrán López-de-Ipina, Karmele Caballer, Oscar Solans Marti-Puig, Pere Sánchez-Méndez, José Ignacio Iradi, Jon Bergareche, Alberto Solé-Casals, Jordi EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks |
title | EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks |
title_full | EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks |
title_fullStr | EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks |
title_full_unstemmed | EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks |
title_short | EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks |
title_sort | emd-based data augmentation method applied to handwriting data for the diagnosis of essential tremor using lstm networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9329364/ https://www.ncbi.nlm.nih.gov/pubmed/35896618 http://dx.doi.org/10.1038/s41598-022-16741-y |
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