Cargando…

Antibody-Antigen Binding Interface Analysis in the Big Data Era

Antibodies have become the Swiss Army tool for molecular biology and nanotechnology. Their outstanding ability to specifically recognise molecular antigens allows their use in many different applications from medicine to the industry. Moreover, the improvement of conventional structural biology tech...

Descripción completa

Detalles Bibliográficos
Autores principales: Reis, Pedro B. P. S., Barletta, German P., Gagliardi, Luca, Fortuna, Sara, Soler, Miguel A., Rocchia, Walter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9329859/
https://www.ncbi.nlm.nih.gov/pubmed/35911958
http://dx.doi.org/10.3389/fmolb.2022.945808
_version_ 1784758018583298048
author Reis, Pedro B. P. S.
Barletta, German P.
Gagliardi, Luca
Fortuna, Sara
Soler, Miguel A.
Rocchia, Walter
author_facet Reis, Pedro B. P. S.
Barletta, German P.
Gagliardi, Luca
Fortuna, Sara
Soler, Miguel A.
Rocchia, Walter
author_sort Reis, Pedro B. P. S.
collection PubMed
description Antibodies have become the Swiss Army tool for molecular biology and nanotechnology. Their outstanding ability to specifically recognise molecular antigens allows their use in many different applications from medicine to the industry. Moreover, the improvement of conventional structural biology techniques (e.g., X-ray, NMR) as well as the emergence of new ones (e.g., Cryo-EM), have permitted in the last years a notable increase of resolved antibody-antigen structures. This offers a unique opportunity to perform an exhaustive structural analysis of antibody-antigen interfaces by employing the large amount of data available nowadays. To leverage this factor, different geometric as well as chemical descriptors were evaluated to perform a comprehensive characterization.
format Online
Article
Text
id pubmed-9329859
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-93298592022-07-29 Antibody-Antigen Binding Interface Analysis in the Big Data Era Reis, Pedro B. P. S. Barletta, German P. Gagliardi, Luca Fortuna, Sara Soler, Miguel A. Rocchia, Walter Front Mol Biosci Molecular Biosciences Antibodies have become the Swiss Army tool for molecular biology and nanotechnology. Their outstanding ability to specifically recognise molecular antigens allows their use in many different applications from medicine to the industry. Moreover, the improvement of conventional structural biology techniques (e.g., X-ray, NMR) as well as the emergence of new ones (e.g., Cryo-EM), have permitted in the last years a notable increase of resolved antibody-antigen structures. This offers a unique opportunity to perform an exhaustive structural analysis of antibody-antigen interfaces by employing the large amount of data available nowadays. To leverage this factor, different geometric as well as chemical descriptors were evaluated to perform a comprehensive characterization. Frontiers Media S.A. 2022-07-14 /pmc/articles/PMC9329859/ /pubmed/35911958 http://dx.doi.org/10.3389/fmolb.2022.945808 Text en Copyright © 2022 Reis, Barletta, Gagliardi, Fortuna, Soler and Rocchia. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Reis, Pedro B. P. S.
Barletta, German P.
Gagliardi, Luca
Fortuna, Sara
Soler, Miguel A.
Rocchia, Walter
Antibody-Antigen Binding Interface Analysis in the Big Data Era
title Antibody-Antigen Binding Interface Analysis in the Big Data Era
title_full Antibody-Antigen Binding Interface Analysis in the Big Data Era
title_fullStr Antibody-Antigen Binding Interface Analysis in the Big Data Era
title_full_unstemmed Antibody-Antigen Binding Interface Analysis in the Big Data Era
title_short Antibody-Antigen Binding Interface Analysis in the Big Data Era
title_sort antibody-antigen binding interface analysis in the big data era
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9329859/
https://www.ncbi.nlm.nih.gov/pubmed/35911958
http://dx.doi.org/10.3389/fmolb.2022.945808
work_keys_str_mv AT reispedrobps antibodyantigenbindinginterfaceanalysisinthebigdataera
AT barlettagermanp antibodyantigenbindinginterfaceanalysisinthebigdataera
AT gagliardiluca antibodyantigenbindinginterfaceanalysisinthebigdataera
AT fortunasara antibodyantigenbindinginterfaceanalysisinthebigdataera
AT solermiguela antibodyantigenbindinginterfaceanalysisinthebigdataera
AT rocchiawalter antibodyantigenbindinginterfaceanalysisinthebigdataera