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UNetGE: A U-Net-Based Software at Automatic Grain Extraction for Image Analysis of the Grain Size and Shape Characteristics

The shape and the size of grains in sediments and soils have a significant influence on their engineering properties. Image analysis of grain shape and size has been increasingly applied in geotechnical engineering to provide a quantitative statistical description for grain morphologies. The statist...

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Detalles Bibliográficos
Autores principales: Zeng, Ling, Li, Tianbin, Wang, Xiekang, Chen, Lei, Zeng, Peng, Herrin, Jason Scott
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9330053/
https://www.ncbi.nlm.nih.gov/pubmed/35898069
http://dx.doi.org/10.3390/s22155565
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author Zeng, Ling
Li, Tianbin
Wang, Xiekang
Chen, Lei
Zeng, Peng
Herrin, Jason Scott
author_facet Zeng, Ling
Li, Tianbin
Wang, Xiekang
Chen, Lei
Zeng, Peng
Herrin, Jason Scott
author_sort Zeng, Ling
collection PubMed
description The shape and the size of grains in sediments and soils have a significant influence on their engineering properties. Image analysis of grain shape and size has been increasingly applied in geotechnical engineering to provide a quantitative statistical description for grain morphologies. The statistic robustness and the era of big data in geotechnical engineering require the quick and efficient acquirement of large data sets of grain morphologies. In the past publications, some semi-automation algorithms in extracting grains from images may cost tens of minutes. With the rapid development of deep learning networks applied to earth sciences, we develop UNetGE software that is based on the U-Net architecture—a fully convolutional network—to recognize and segregate grains from the matrix using the electron and optical microphotographs of rock and soil thin sections or the photographs of their hand specimen and outcrops. Resultantly, it shows that UNetGE can extract approximately 300~1300 grains in a few seconds to a few minutes and provide their morphologic parameters, which will ably assist with analyses on the engineering properties of sediments and soils (e.g., permeability, strength, and expansivity) and their hydraulic characteristics.
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spelling pubmed-93300532022-07-29 UNetGE: A U-Net-Based Software at Automatic Grain Extraction for Image Analysis of the Grain Size and Shape Characteristics Zeng, Ling Li, Tianbin Wang, Xiekang Chen, Lei Zeng, Peng Herrin, Jason Scott Sensors (Basel) Article The shape and the size of grains in sediments and soils have a significant influence on their engineering properties. Image analysis of grain shape and size has been increasingly applied in geotechnical engineering to provide a quantitative statistical description for grain morphologies. The statistic robustness and the era of big data in geotechnical engineering require the quick and efficient acquirement of large data sets of grain morphologies. In the past publications, some semi-automation algorithms in extracting grains from images may cost tens of minutes. With the rapid development of deep learning networks applied to earth sciences, we develop UNetGE software that is based on the U-Net architecture—a fully convolutional network—to recognize and segregate grains from the matrix using the electron and optical microphotographs of rock and soil thin sections or the photographs of their hand specimen and outcrops. Resultantly, it shows that UNetGE can extract approximately 300~1300 grains in a few seconds to a few minutes and provide their morphologic parameters, which will ably assist with analyses on the engineering properties of sediments and soils (e.g., permeability, strength, and expansivity) and their hydraulic characteristics. MDPI 2022-07-26 /pmc/articles/PMC9330053/ /pubmed/35898069 http://dx.doi.org/10.3390/s22155565 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zeng, Ling
Li, Tianbin
Wang, Xiekang
Chen, Lei
Zeng, Peng
Herrin, Jason Scott
UNetGE: A U-Net-Based Software at Automatic Grain Extraction for Image Analysis of the Grain Size and Shape Characteristics
title UNetGE: A U-Net-Based Software at Automatic Grain Extraction for Image Analysis of the Grain Size and Shape Characteristics
title_full UNetGE: A U-Net-Based Software at Automatic Grain Extraction for Image Analysis of the Grain Size and Shape Characteristics
title_fullStr UNetGE: A U-Net-Based Software at Automatic Grain Extraction for Image Analysis of the Grain Size and Shape Characteristics
title_full_unstemmed UNetGE: A U-Net-Based Software at Automatic Grain Extraction for Image Analysis of the Grain Size and Shape Characteristics
title_short UNetGE: A U-Net-Based Software at Automatic Grain Extraction for Image Analysis of the Grain Size and Shape Characteristics
title_sort unetge: a u-net-based software at automatic grain extraction for image analysis of the grain size and shape characteristics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9330053/
https://www.ncbi.nlm.nih.gov/pubmed/35898069
http://dx.doi.org/10.3390/s22155565
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