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Generating Douglas-fir Breeding Value Estimates Using Airborne Laser Scanning Derived Height and Crown Metrics

Progeny test trials in British Columbia are essential in assessing the genetic performance via the prediction of breeding values (BVs) for target phenotypes of parent trees and their offspring. Accurate and timely collection of phenotypic data is critical for estimating BVs with confidence. Airborne...

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Autores principales: du Toit, Francois, Coops, Nicholas C., Ratcliffe, Blaise, El-Kassaby, Yousry A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9330362/
https://www.ncbi.nlm.nih.gov/pubmed/35909722
http://dx.doi.org/10.3389/fpls.2022.893017
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author du Toit, Francois
Coops, Nicholas C.
Ratcliffe, Blaise
El-Kassaby, Yousry A.
author_facet du Toit, Francois
Coops, Nicholas C.
Ratcliffe, Blaise
El-Kassaby, Yousry A.
author_sort du Toit, Francois
collection PubMed
description Progeny test trials in British Columbia are essential in assessing the genetic performance via the prediction of breeding values (BVs) for target phenotypes of parent trees and their offspring. Accurate and timely collection of phenotypic data is critical for estimating BVs with confidence. Airborne Laser Scanning (ALS) data have been used to measure tree height and structure across a wide range of species, ages and environments globally. Here, we analyzed a Coastal Douglas-fir [Pseudotsuga menziesii var. menziesii (Mirb.)] progeny test trial located in British Columbia, Canada, using individual tree high-density Airborne Laser Scanning (ALS) metrics and traditional ground-based phenotypic observations. Narrow-sense heritability, genetic correlations, and BVs were estimated using pedigree-based single and multi-trait linear models for 43 traits. Comparisons of genetic parameter estimates between ALS metrics and traditional ground-based measures and single- and multi-trait models were conducted based on the accuracy and precision of the estimates. BVs were estimated for two ALS models (ALS(CAN) and ALS(ACC)) representing two model-building approaches and compared to a baseline model using field-measured traits. The ALS(CAN) model used metrics reflecting aspects of vertical distribution of biomass within trees, while ALS(ACC) represented the most statistically accurate model. We report that the accuracy of both the ALS(CAN) (0.8239) and ALS(ACC) (0.8254) model-derived BVs for mature tree height is a suitable proxy for ground-based mature tree height BVs (0.8316). Given the cost efficiency of ALS, forest geneticists should explore this technology as a viable tool to increase breeding programs’ overall efficiency and cost savings.
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spelling pubmed-93303622022-07-29 Generating Douglas-fir Breeding Value Estimates Using Airborne Laser Scanning Derived Height and Crown Metrics du Toit, Francois Coops, Nicholas C. Ratcliffe, Blaise El-Kassaby, Yousry A. Front Plant Sci Plant Science Progeny test trials in British Columbia are essential in assessing the genetic performance via the prediction of breeding values (BVs) for target phenotypes of parent trees and their offspring. Accurate and timely collection of phenotypic data is critical for estimating BVs with confidence. Airborne Laser Scanning (ALS) data have been used to measure tree height and structure across a wide range of species, ages and environments globally. Here, we analyzed a Coastal Douglas-fir [Pseudotsuga menziesii var. menziesii (Mirb.)] progeny test trial located in British Columbia, Canada, using individual tree high-density Airborne Laser Scanning (ALS) metrics and traditional ground-based phenotypic observations. Narrow-sense heritability, genetic correlations, and BVs were estimated using pedigree-based single and multi-trait linear models for 43 traits. Comparisons of genetic parameter estimates between ALS metrics and traditional ground-based measures and single- and multi-trait models were conducted based on the accuracy and precision of the estimates. BVs were estimated for two ALS models (ALS(CAN) and ALS(ACC)) representing two model-building approaches and compared to a baseline model using field-measured traits. The ALS(CAN) model used metrics reflecting aspects of vertical distribution of biomass within trees, while ALS(ACC) represented the most statistically accurate model. We report that the accuracy of both the ALS(CAN) (0.8239) and ALS(ACC) (0.8254) model-derived BVs for mature tree height is a suitable proxy for ground-based mature tree height BVs (0.8316). Given the cost efficiency of ALS, forest geneticists should explore this technology as a viable tool to increase breeding programs’ overall efficiency and cost savings. Frontiers Media S.A. 2022-07-14 /pmc/articles/PMC9330362/ /pubmed/35909722 http://dx.doi.org/10.3389/fpls.2022.893017 Text en Copyright © 2022 du Toit, Coops, Ratcliffe and El-Kassaby. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
du Toit, Francois
Coops, Nicholas C.
Ratcliffe, Blaise
El-Kassaby, Yousry A.
Generating Douglas-fir Breeding Value Estimates Using Airborne Laser Scanning Derived Height and Crown Metrics
title Generating Douglas-fir Breeding Value Estimates Using Airborne Laser Scanning Derived Height and Crown Metrics
title_full Generating Douglas-fir Breeding Value Estimates Using Airborne Laser Scanning Derived Height and Crown Metrics
title_fullStr Generating Douglas-fir Breeding Value Estimates Using Airborne Laser Scanning Derived Height and Crown Metrics
title_full_unstemmed Generating Douglas-fir Breeding Value Estimates Using Airborne Laser Scanning Derived Height and Crown Metrics
title_short Generating Douglas-fir Breeding Value Estimates Using Airborne Laser Scanning Derived Height and Crown Metrics
title_sort generating douglas-fir breeding value estimates using airborne laser scanning derived height and crown metrics
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9330362/
https://www.ncbi.nlm.nih.gov/pubmed/35909722
http://dx.doi.org/10.3389/fpls.2022.893017
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