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Opto-Electrostatic Determination of Nucleic Acid Double-Helix Dimensions and the Structure of the Molecule–Solvent Interface

[Image: see text] A DNA molecule is highly electrically charged in solution. The electrical potential at the molecular surface is known to vary strongly with the local geometry of the double helix and plays a pivotal role in DNA–protein interactions. Further out from the molecular surface, the elect...

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Autores principales: Bespalova, Maria, Behjatian, Ali, Karedla, Narain, Walker-Gibbons, Rowan, Krishnan, Madhavi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9330769/
https://www.ncbi.nlm.nih.gov/pubmed/35910310
http://dx.doi.org/10.1021/acs.macromol.2c00657
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author Bespalova, Maria
Behjatian, Ali
Karedla, Narain
Walker-Gibbons, Rowan
Krishnan, Madhavi
author_facet Bespalova, Maria
Behjatian, Ali
Karedla, Narain
Walker-Gibbons, Rowan
Krishnan, Madhavi
author_sort Bespalova, Maria
collection PubMed
description [Image: see text] A DNA molecule is highly electrically charged in solution. The electrical potential at the molecular surface is known to vary strongly with the local geometry of the double helix and plays a pivotal role in DNA–protein interactions. Further out from the molecular surface, the electrical field propagating into the surrounding electrolyte bears fingerprints of the three-dimensional arrangement of the charged atoms in the molecule. However, precise extraction of the structural information encoded in the electrostatic “far field” has remained experimentally challenging. Here, we report an optical microscopy-based approach that detects the field distribution surrounding a charged molecule in solution, revealing geometric features such as the radius and the average rise per basepair of the double helix with up to sub-Angstrom precision, comparable with traditional molecular structure determination techniques like X-ray crystallography and nuclear magnetic resonance. Moreover, measurement of the helical radius furnishes an unprecedented view of both hydration and the arrangement of cations at the molecule–solvent interface. We demonstrate that a probe in the electrostatic far field delivers structural and chemical information on macromolecules, opening up a new dimension in the study of charged molecules and interfaces in solution.
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spelling pubmed-93307692022-07-29 Opto-Electrostatic Determination of Nucleic Acid Double-Helix Dimensions and the Structure of the Molecule–Solvent Interface Bespalova, Maria Behjatian, Ali Karedla, Narain Walker-Gibbons, Rowan Krishnan, Madhavi Macromolecules [Image: see text] A DNA molecule is highly electrically charged in solution. The electrical potential at the molecular surface is known to vary strongly with the local geometry of the double helix and plays a pivotal role in DNA–protein interactions. Further out from the molecular surface, the electrical field propagating into the surrounding electrolyte bears fingerprints of the three-dimensional arrangement of the charged atoms in the molecule. However, precise extraction of the structural information encoded in the electrostatic “far field” has remained experimentally challenging. Here, we report an optical microscopy-based approach that detects the field distribution surrounding a charged molecule in solution, revealing geometric features such as the radius and the average rise per basepair of the double helix with up to sub-Angstrom precision, comparable with traditional molecular structure determination techniques like X-ray crystallography and nuclear magnetic resonance. Moreover, measurement of the helical radius furnishes an unprecedented view of both hydration and the arrangement of cations at the molecule–solvent interface. We demonstrate that a probe in the electrostatic far field delivers structural and chemical information on macromolecules, opening up a new dimension in the study of charged molecules and interfaces in solution. American Chemical Society 2022-07-01 2022-07-26 /pmc/articles/PMC9330769/ /pubmed/35910310 http://dx.doi.org/10.1021/acs.macromol.2c00657 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Bespalova, Maria
Behjatian, Ali
Karedla, Narain
Walker-Gibbons, Rowan
Krishnan, Madhavi
Opto-Electrostatic Determination of Nucleic Acid Double-Helix Dimensions and the Structure of the Molecule–Solvent Interface
title Opto-Electrostatic Determination of Nucleic Acid Double-Helix Dimensions and the Structure of the Molecule–Solvent Interface
title_full Opto-Electrostatic Determination of Nucleic Acid Double-Helix Dimensions and the Structure of the Molecule–Solvent Interface
title_fullStr Opto-Electrostatic Determination of Nucleic Acid Double-Helix Dimensions and the Structure of the Molecule–Solvent Interface
title_full_unstemmed Opto-Electrostatic Determination of Nucleic Acid Double-Helix Dimensions and the Structure of the Molecule–Solvent Interface
title_short Opto-Electrostatic Determination of Nucleic Acid Double-Helix Dimensions and the Structure of the Molecule–Solvent Interface
title_sort opto-electrostatic determination of nucleic acid double-helix dimensions and the structure of the molecule–solvent interface
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9330769/
https://www.ncbi.nlm.nih.gov/pubmed/35910310
http://dx.doi.org/10.1021/acs.macromol.2c00657
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