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Coarse-Grained Water Model Development for Accurate Dynamics and Structure Prediction
[Image: see text] Several coarse-graining (CG) methods have been combined to develop a CG model of water capable of the accurate prediction of structure and dynamics properties. The multiscale coarse-graining (MS-CG) method based on force matching and the PDF-based coarse-graining method were used f...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9330847/ https://www.ncbi.nlm.nih.gov/pubmed/35910114 http://dx.doi.org/10.1021/acsomega.2c03857 |
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author | Markutsya, Sergiy Haley, Austin Gordon, Mark S. |
author_facet | Markutsya, Sergiy Haley, Austin Gordon, Mark S. |
author_sort | Markutsya, Sergiy |
collection | PubMed |
description | [Image: see text] Several coarse-graining (CG) methods have been combined to develop a CG model of water capable of the accurate prediction of structure and dynamics properties. The multiscale coarse-graining (MS-CG) method based on force matching and the PDF-based coarse-graining method were used for accurate dynamics prediction. The iterative Boltzmann inversion (IBI) method was added for accurate structure representation. The approach is applied to bulk water, and the results show close reproduction of the CG structure when compared with the reference atomistic data. The combination of MS-CG and IBI methods facilitates the development of CG force fields at different temperatures based on a single MS-CG coarse-graining procedure. The dynamic properties of the CG water model closely match those obtained from the reference atomistic system. The general application of this approach to any existing coarse-graining methods is discussed. |
format | Online Article Text |
id | pubmed-9330847 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-93308472022-07-29 Coarse-Grained Water Model Development for Accurate Dynamics and Structure Prediction Markutsya, Sergiy Haley, Austin Gordon, Mark S. ACS Omega [Image: see text] Several coarse-graining (CG) methods have been combined to develop a CG model of water capable of the accurate prediction of structure and dynamics properties. The multiscale coarse-graining (MS-CG) method based on force matching and the PDF-based coarse-graining method were used for accurate dynamics prediction. The iterative Boltzmann inversion (IBI) method was added for accurate structure representation. The approach is applied to bulk water, and the results show close reproduction of the CG structure when compared with the reference atomistic data. The combination of MS-CG and IBI methods facilitates the development of CG force fields at different temperatures based on a single MS-CG coarse-graining procedure. The dynamic properties of the CG water model closely match those obtained from the reference atomistic system. The general application of this approach to any existing coarse-graining methods is discussed. American Chemical Society 2022-07-12 /pmc/articles/PMC9330847/ /pubmed/35910114 http://dx.doi.org/10.1021/acsomega.2c03857 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Markutsya, Sergiy Haley, Austin Gordon, Mark S. Coarse-Grained Water Model Development for Accurate Dynamics and Structure Prediction |
title | Coarse-Grained
Water Model Development for Accurate
Dynamics and Structure Prediction |
title_full | Coarse-Grained
Water Model Development for Accurate
Dynamics and Structure Prediction |
title_fullStr | Coarse-Grained
Water Model Development for Accurate
Dynamics and Structure Prediction |
title_full_unstemmed | Coarse-Grained
Water Model Development for Accurate
Dynamics and Structure Prediction |
title_short | Coarse-Grained
Water Model Development for Accurate
Dynamics and Structure Prediction |
title_sort | coarse-grained
water model development for accurate
dynamics and structure prediction |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9330847/ https://www.ncbi.nlm.nih.gov/pubmed/35910114 http://dx.doi.org/10.1021/acsomega.2c03857 |
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