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An Efficient Multi-Scale Convolutional Neural Network Based Multi-Class Brain MRI Classification for SaMD

A brain tumor is the growth of abnormal cells in certain brain tissues with a high mortality rate; therefore, it requires high precision in diagnosis, as a minor human judgment can eventually cause severe consequences. Magnetic Resonance Image (MRI) serves as a non-invasive tool to detect the presen...

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Autores principales: Yazdan, Syed Ali, Ahmad, Rashid, Iqbal, Naeem, Rizwan, Atif, Khan, Anam Nawaz, Kim, Do-Hyeun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9330870/
https://www.ncbi.nlm.nih.gov/pubmed/35894026
http://dx.doi.org/10.3390/tomography8040161
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author Yazdan, Syed Ali
Ahmad, Rashid
Iqbal, Naeem
Rizwan, Atif
Khan, Anam Nawaz
Kim, Do-Hyeun
author_facet Yazdan, Syed Ali
Ahmad, Rashid
Iqbal, Naeem
Rizwan, Atif
Khan, Anam Nawaz
Kim, Do-Hyeun
author_sort Yazdan, Syed Ali
collection PubMed
description A brain tumor is the growth of abnormal cells in certain brain tissues with a high mortality rate; therefore, it requires high precision in diagnosis, as a minor human judgment can eventually cause severe consequences. Magnetic Resonance Image (MRI) serves as a non-invasive tool to detect the presence of a tumor. However, Rician noise is inevitably instilled during the image acquisition process, which leads to poor observation and interferes with the treatment. Computer-Aided Diagnosis (CAD) systems can perform early diagnosis of the disease, potentially increasing the chances of survival, and lessening the need for an expert to analyze the MRIs. Convolutional Neural Networks (CNN) have proven to be very effective in tumor detection in brain MRIs. There have been multiple studies dedicated to brain tumor classification; however, these techniques lack the evaluation of the impact of the Rician noise on state-of-the-art deep learning techniques and the consideration of the scaling impact on the performance of the deep learning as the size and location of tumors vary from image to image with irregular shape and boundaries. Moreover, transfer learning-based pre-trained models such as AlexNet and ResNet have been used for brain tumor detection. However, these architectures have many trainable parameters and hence have a high computational cost. This study proposes a two-fold solution: (a) Multi-Scale CNN (MSCNN) architecture to develop a robust classification model for brain tumor diagnosis, and (b) minimizing the impact of Rician noise on the performance of the MSCNN. The proposed model is a multi-class classification solution that classifies MRIs into glioma, meningioma, pituitary, and non-tumor. The core objective is to develop a robust model for enhancing the performance of the existing tumor detection systems in terms of accuracy and efficiency. Furthermore, MRIs are denoised using a Fuzzy Similarity-based Non-Local Means (FSNLM) filter to improve the classification results. Different evaluation metrics are employed, such as accuracy, precision, recall, specificity, and F1-score, to evaluate and compare the performance of the proposed multi-scale CNN and other state-of-the-art techniques, such as AlexNet and ResNet. In addition, trainable and non-trainable parameters of the proposed model and the existing techniques are also compared to evaluate the computational efficiency. The experimental results show that the proposed multi-scale CNN model outperforms AlexNet and ResNet in terms of accuracy and efficiency at a lower computational cost. Based on experimental results, it is found that our proposed MCNN2 achieved accuracy and F1-score of 91.2% and 91%, respectively, which is significantly higher than the existing AlexNet and ResNet techniques. Moreover, our findings suggest that the proposed model is more effective and efficient in facilitating clinical research and practice for MRI classification.
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spelling pubmed-93308702022-07-29 An Efficient Multi-Scale Convolutional Neural Network Based Multi-Class Brain MRI Classification for SaMD Yazdan, Syed Ali Ahmad, Rashid Iqbal, Naeem Rizwan, Atif Khan, Anam Nawaz Kim, Do-Hyeun Tomography Article A brain tumor is the growth of abnormal cells in certain brain tissues with a high mortality rate; therefore, it requires high precision in diagnosis, as a minor human judgment can eventually cause severe consequences. Magnetic Resonance Image (MRI) serves as a non-invasive tool to detect the presence of a tumor. However, Rician noise is inevitably instilled during the image acquisition process, which leads to poor observation and interferes with the treatment. Computer-Aided Diagnosis (CAD) systems can perform early diagnosis of the disease, potentially increasing the chances of survival, and lessening the need for an expert to analyze the MRIs. Convolutional Neural Networks (CNN) have proven to be very effective in tumor detection in brain MRIs. There have been multiple studies dedicated to brain tumor classification; however, these techniques lack the evaluation of the impact of the Rician noise on state-of-the-art deep learning techniques and the consideration of the scaling impact on the performance of the deep learning as the size and location of tumors vary from image to image with irregular shape and boundaries. Moreover, transfer learning-based pre-trained models such as AlexNet and ResNet have been used for brain tumor detection. However, these architectures have many trainable parameters and hence have a high computational cost. This study proposes a two-fold solution: (a) Multi-Scale CNN (MSCNN) architecture to develop a robust classification model for brain tumor diagnosis, and (b) minimizing the impact of Rician noise on the performance of the MSCNN. The proposed model is a multi-class classification solution that classifies MRIs into glioma, meningioma, pituitary, and non-tumor. The core objective is to develop a robust model for enhancing the performance of the existing tumor detection systems in terms of accuracy and efficiency. Furthermore, MRIs are denoised using a Fuzzy Similarity-based Non-Local Means (FSNLM) filter to improve the classification results. Different evaluation metrics are employed, such as accuracy, precision, recall, specificity, and F1-score, to evaluate and compare the performance of the proposed multi-scale CNN and other state-of-the-art techniques, such as AlexNet and ResNet. In addition, trainable and non-trainable parameters of the proposed model and the existing techniques are also compared to evaluate the computational efficiency. The experimental results show that the proposed multi-scale CNN model outperforms AlexNet and ResNet in terms of accuracy and efficiency at a lower computational cost. Based on experimental results, it is found that our proposed MCNN2 achieved accuracy and F1-score of 91.2% and 91%, respectively, which is significantly higher than the existing AlexNet and ResNet techniques. Moreover, our findings suggest that the proposed model is more effective and efficient in facilitating clinical research and practice for MRI classification. MDPI 2022-07-26 /pmc/articles/PMC9330870/ /pubmed/35894026 http://dx.doi.org/10.3390/tomography8040161 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yazdan, Syed Ali
Ahmad, Rashid
Iqbal, Naeem
Rizwan, Atif
Khan, Anam Nawaz
Kim, Do-Hyeun
An Efficient Multi-Scale Convolutional Neural Network Based Multi-Class Brain MRI Classification for SaMD
title An Efficient Multi-Scale Convolutional Neural Network Based Multi-Class Brain MRI Classification for SaMD
title_full An Efficient Multi-Scale Convolutional Neural Network Based Multi-Class Brain MRI Classification for SaMD
title_fullStr An Efficient Multi-Scale Convolutional Neural Network Based Multi-Class Brain MRI Classification for SaMD
title_full_unstemmed An Efficient Multi-Scale Convolutional Neural Network Based Multi-Class Brain MRI Classification for SaMD
title_short An Efficient Multi-Scale Convolutional Neural Network Based Multi-Class Brain MRI Classification for SaMD
title_sort efficient multi-scale convolutional neural network based multi-class brain mri classification for samd
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9330870/
https://www.ncbi.nlm.nih.gov/pubmed/35894026
http://dx.doi.org/10.3390/tomography8040161
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