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A Diagnostic Model Using Exosomal Genes for Colorectal Cancer

Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide. Exosomes have great potential as liquid biopsy specimens due to their presence and stability in body fluids. However, the function and diagnostic values of exosomal genes in CRC are poorly understood. In the present study...

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Autores principales: Lei, Tianxiang, Zhang, Yongxin, Wang, Xiaofeng, Liu, Wenwei, Feng, Wei, Song, Wu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9334773/
https://www.ncbi.nlm.nih.gov/pubmed/35910195
http://dx.doi.org/10.3389/fgene.2022.863747
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author Lei, Tianxiang
Zhang, Yongxin
Wang, Xiaofeng
Liu, Wenwei
Feng, Wei
Song, Wu
author_facet Lei, Tianxiang
Zhang, Yongxin
Wang, Xiaofeng
Liu, Wenwei
Feng, Wei
Song, Wu
author_sort Lei, Tianxiang
collection PubMed
description Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide. Exosomes have great potential as liquid biopsy specimens due to their presence and stability in body fluids. However, the function and diagnostic values of exosomal genes in CRC are poorly understood. In the present study, exosomal data of CRC and healthy samples from the exoRBase 2.0 and Gene Expression Omnibus (GEO) databases were used, and 38 common exosomal genes were identified. Through the least absolute shrinkage and selection operator (Lasso) analysis, support vector machine recursive feature elimination (SVM-RFE) analysis, and logistic regression analysis, a diagnostic model of the training set was constructed based on 6 exosomal genes. The diagnostic model was internally validated in the test and exoRBase 2.0 database and externally validated in the GEO database. In addition, the co-expression analysis was used to cluster co-expression modules, and the enrichment analysis was performed on module genes. Then a protein–protein interaction and competing endogenous RNA network were constructed and 10 hub genes were identified using module genes. In conclusion, the results provided a comprehensive understanding of the functions of exosomal genes in CRC as well as a diagnostic model related to exosomal genes.
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spelling pubmed-93347732022-07-30 A Diagnostic Model Using Exosomal Genes for Colorectal Cancer Lei, Tianxiang Zhang, Yongxin Wang, Xiaofeng Liu, Wenwei Feng, Wei Song, Wu Front Genet Genetics Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide. Exosomes have great potential as liquid biopsy specimens due to their presence and stability in body fluids. However, the function and diagnostic values of exosomal genes in CRC are poorly understood. In the present study, exosomal data of CRC and healthy samples from the exoRBase 2.0 and Gene Expression Omnibus (GEO) databases were used, and 38 common exosomal genes were identified. Through the least absolute shrinkage and selection operator (Lasso) analysis, support vector machine recursive feature elimination (SVM-RFE) analysis, and logistic regression analysis, a diagnostic model of the training set was constructed based on 6 exosomal genes. The diagnostic model was internally validated in the test and exoRBase 2.0 database and externally validated in the GEO database. In addition, the co-expression analysis was used to cluster co-expression modules, and the enrichment analysis was performed on module genes. Then a protein–protein interaction and competing endogenous RNA network were constructed and 10 hub genes were identified using module genes. In conclusion, the results provided a comprehensive understanding of the functions of exosomal genes in CRC as well as a diagnostic model related to exosomal genes. Frontiers Media S.A. 2022-07-15 /pmc/articles/PMC9334773/ /pubmed/35910195 http://dx.doi.org/10.3389/fgene.2022.863747 Text en Copyright © 2022 Lei, Zhang, Wang, Liu, Feng and Song. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Lei, Tianxiang
Zhang, Yongxin
Wang, Xiaofeng
Liu, Wenwei
Feng, Wei
Song, Wu
A Diagnostic Model Using Exosomal Genes for Colorectal Cancer
title A Diagnostic Model Using Exosomal Genes for Colorectal Cancer
title_full A Diagnostic Model Using Exosomal Genes for Colorectal Cancer
title_fullStr A Diagnostic Model Using Exosomal Genes for Colorectal Cancer
title_full_unstemmed A Diagnostic Model Using Exosomal Genes for Colorectal Cancer
title_short A Diagnostic Model Using Exosomal Genes for Colorectal Cancer
title_sort diagnostic model using exosomal genes for colorectal cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9334773/
https://www.ncbi.nlm.nih.gov/pubmed/35910195
http://dx.doi.org/10.3389/fgene.2022.863747
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