Cargando…

Evaluation of Full-Length Versus V4-Region 16S rRNA Sequencing for Phylogenetic Analysis of Mouse Intestinal Microbiota After a Dietary Intervention

The composition of microbial communities is commonly determined by sequence analyses of one of the variable (V) regions in the bacterial 16S rRNA gene. We aimed to assess whether sequencing the full-length versus the V4 region of the 16S rRNA gene affected the results and interpretation of an experi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Katiraei, Saeed, Anvar, Yahya, Hoving, Lisa, Berbée, Jimmy F. P., van Harmelen, Vanessa, Willems van Dijk, Ko
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Springer US 2022
Materias:	Short Communication
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9338901/ https://www.ncbi.nlm.nih.gov/pubmed/35907023 http://dx.doi.org/10.1007/s00284-022-02956-9

Ejemplares similares

Dietary Mannan Oligosaccharides Modulate Gut Microbiota, Increase Fecal Bile Acid Excretion, and Decrease Plasma Cholesterol and Atherosclerosis Development
por: R. Hoving, Lisa, et al.
Publicado: (2018)

BMT decreases HFD-induced weight gain associated with decreased preadipocyte number and insulin secretion
por: Katiraei, Saeed, et al.
Publicado: (2017)

Bone marrow transplantation induces changes in the gut microbiota that chronically increase the cytokine response pattern of splenocytes
por: Katiraei, Saeed, et al.
Publicado: (2022)

The prebiotic inulin modulates gut microbiota but does not ameliorate atherosclerosis in hypercholesterolemic APOE*3-Leiden.CETP mice
por: Hoving, Lisa R., et al.
Publicado: (2018)

The Prebiotic Inulin Aggravates Accelerated Atherosclerosis in Hypercholesterolemic APOE*3-Leiden Mice
por: Hoving, Lisa R., et al.
Publicado: (2018)

Loss of angiopoietin-like 4 (ANGPTL4) in mice with diet-induced obesity uncouples visceral obesity from glucose intolerance partly via the gut microbiota
por: Janssen, Aafke W. F., et al.
Publicado: (2018)

Metagenomic and near full-length 16S rRNA sequence data in support of the phylogenetic analysis of the rumen bacterial community in steers
por: Myer, Phillip R., et al.
Publicado: (2016)

Akkermansia muciniphila Exerts Lipid‐Lowering and Immunomodulatory Effects without Affecting Neointima Formation in Hyperlipidemic APOE*3‐Leiden.CETP Mice
por: Katiraei, Saeed, et al.
Publicado: (2019)

Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
por: Cuscó, Anna, et al.
Publicado: (2019)

Dietary yeast-derived mannan oligosaccharides have immune-modulatory properties but do not improve high fat diet-induced obesity and glucose intolerance
por: Hoving, Lisa R., et al.
Publicado: (2018)

Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing
por: Wang, Haiyang, et al.
Publicado: (2021)

16S-FASAS: an integrated pipeline for synthetic full-length 16S rRNA gene sequencing data analysis
por: Zhang, Ke, et al.
Publicado: (2022)

Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification
por: Wagner, Josef, et al.
Publicado: (2016)

Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing
por: Shin, Jongoh, et al.
Publicado: (2016)

Microbial Richness of Marine Biofilms Revealed by Sequencing Full-Length 16S rRNA Genes
por: Wang, Shougang, et al.
Publicado: (2022)

16S rRNA Terminal Restriction Fragment Length Polymorphism for the Characterization of the Nasopharyngeal Microbiota
por: Brugger, Silvio D., et al.
Publicado: (2012)

Pyrosequence Read Length of 16S rRNA Gene Affects Phylogenetic Assignment of Plant-associated Bacteria
por: Okubo, Takashi, et al.
Publicado: (2012)

Characterization of bacterial communities in wastewater with enhanced taxonomic resolution by full-length 16S rRNA sequencing
por: Numberger, Daniela, et al.
Publicado: (2019)

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution
por: Callahan, Benjamin J, et al.
Publicado: (2019)

The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology
por: Jeong, Jinuk, et al.
Publicado: (2021)

Serovar-level Identification of Bacterial Foodborne Pathogens From Full-length 16S rRNA Gene Sequencing
por: Grinevich, Dmitry, et al.
Publicado: (2023)

Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
por: Matsuo, Yoshiyuki, et al.
Publicado: (2021)

A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq
por: Burke, Catherine M., et al.
Publicado: (2016)

Comparisons of the Oral Microbiota from Seven Species of Wild Venomous Snakes in Taiwan Using the High-Throughput Amplicon Sequencing of the Full-Length 16S rRNA Gene
por: Lin, Wen-Hao, et al.
Publicado: (2023)

Full‐length 16S rRNA gene classification of Atlantic salmon bacteria and effects of using different 16S variable regions on community structure analysis
por: Klemetsen, Terje, et al.
Publicado: (2019)

Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing
por: Myer, Phillip R., et al.
Publicado: (2020)

Full-Length 16S rRNA and ITS Gene Sequencing Revealed Rich Microbial Flora in Roots of Cycas spp. in China
por: Pecundo, Melissa H, et al.
Publicado: (2021)

Publisher Correction: The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology
por: Jeong, Jinuk, et al.
Publicado: (2021)

Full-Length 16S rRNA Gene Amplicon and Metagenome Taxonomic Profiling of Beneficial Microbes in Poultry and Swine Probiotic Product
por: Khongchatee, Adison, et al.
Publicado: (2022)

Phylogenetic inference of Coxiella burnetii by 16S rRNA gene sequencing
por: McLaughlin, Heather P., et al.
Publicado: (2017)

Identification of Initial Colonizing Bacteria in Dental Plaques from Young Adults Using Full-Length 16S rRNA Gene Sequencing
por: Ihara, Yukari, et al.
Publicado: (2019)

Evaluation of PCR conditions for characterizing bacterial communities with full-length 16S rRNA genes using a portable nanopore sequencer
por: Fujiyoshi, So, et al.
Publicado: (2020)

Analysis of the bacterial and fungal populations in South African sorghum beer (umqombothi) using full-length 16S rRNA amplicon sequencing
por: Hlangwani, Edwin, et al.
Publicado: (2023)

Sputum Microbiota in Tuberculosis as Revealed by 16S rRNA Pyrosequencing
por: Cheung, Man Kit, et al.
Publicado: (2013)

Phylogenetic Relationship of Phosphate Solubilizing Bacteria according to 16S rRNA Genes
por: Javadi Nobandegani, Mohammad Bagher, et al.
Publicado: (2015)

Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis
por: Yang, Bo, et al.
Publicado: (2016)

Phylogenetic analysis of Arthrospira strains from Ordos based on 16S rRNA
por: Zhang, Jingnan, et al.
Publicado: (2022)

Full-length 16S rRNA amplicon sequencing reveals the variation of epibiotic microbiota associated with two shrimp species of Alvinocarididae: possibly co-determined by environmental heterogeneity and specific recognition of hosts
por: Hui, Min, et al.
Publicado: (2022)

Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes
por: Earl, Joshua P., et al.
Publicado: (2018)

Increased PUFA Content and 5-Lipoxygenase Pathway Expression Are Associated with Subcutaneous Adipose Tissue Inflammation in Obese Women with Type 2 Diabetes
por: Heemskerk, Mattijs M., et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_6rsh5p237592pgsavjbupb27bo