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Exome sequencing revealed comparable frequencies of RNF43 and BRAF mutations in Middle Eastern colorectal cancer

Mutation-induced activation of Wnt-β Catenin signaling pathway is frequent in CRC. The E3 ubiquitin ligase, RNF43, has been reported to negatively regulate the Wnt signaling pathway and RNF43 mutations are frequently seen in CRC. However, its role in Middle Eastern CRC remains unclear. Therefore, we...

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Autores principales: Siraj, Abdul Khalid, Bu, Rong, Masoodi, Tariq, Parvathareddy, Sandeep Kumar, Iqbal, Kaleem, Al-Haqawi, Wael, Al-Dossari, Hassan, Azam, Saud, Qadri, Zeeshan, Annaiyappanaidu, Padmanaban, Al-Dayel, Fouad, Al-Kuraya, Khawla Sami
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9338933/
https://www.ncbi.nlm.nih.gov/pubmed/35907983
http://dx.doi.org/10.1038/s41598-022-17449-9
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author Siraj, Abdul Khalid
Bu, Rong
Masoodi, Tariq
Parvathareddy, Sandeep Kumar
Iqbal, Kaleem
Al-Haqawi, Wael
Al-Dossari, Hassan
Azam, Saud
Qadri, Zeeshan
Annaiyappanaidu, Padmanaban
Al-Dayel, Fouad
Al-Kuraya, Khawla Sami
author_facet Siraj, Abdul Khalid
Bu, Rong
Masoodi, Tariq
Parvathareddy, Sandeep Kumar
Iqbal, Kaleem
Al-Haqawi, Wael
Al-Dossari, Hassan
Azam, Saud
Qadri, Zeeshan
Annaiyappanaidu, Padmanaban
Al-Dayel, Fouad
Al-Kuraya, Khawla Sami
author_sort Siraj, Abdul Khalid
collection PubMed
description Mutation-induced activation of Wnt-β Catenin signaling pathway is frequent in CRC. The E3 ubiquitin ligase, RNF43, has been reported to negatively regulate the Wnt signaling pathway and RNF43 mutations are frequently seen in CRC. However, its role in Middle Eastern CRC remains unclear. Therefore, we employed Exome and Sanger sequencing technology to assess the frequency of RNF43 mutations and its association with other clinico-pathological features in Middle Eastern CRC. RNF43 mutations were found in 5.9% (13/220) of CRC cases and was inversely correlated to APC and TP53 mutations. A strong association of RNF43 mutations with right sided and sporadic microsatellite instable (MSI) CRC was observed. No association was identified between RNF43 mutation and other clinico-pathological features including BRAF mutation, age, tumor histological subtype, tumor grade or patients’ prognosis. Multivariate logistic regression analysis revealed that MSI status and wild type APC were independent predictor of RNF43 mutation. We conclude that RNF43 mutations occur in Middle Eastern CRC at comparable frequencies with BRAF mutations and represent a distinct molecular subtype which further enhances our understanding of how different mutational subsets of Wnt tumor suppressor genes link to distinct tumor characteristics, which might be considered for treatment strategies for CRC patients.
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spelling pubmed-93389332022-08-01 Exome sequencing revealed comparable frequencies of RNF43 and BRAF mutations in Middle Eastern colorectal cancer Siraj, Abdul Khalid Bu, Rong Masoodi, Tariq Parvathareddy, Sandeep Kumar Iqbal, Kaleem Al-Haqawi, Wael Al-Dossari, Hassan Azam, Saud Qadri, Zeeshan Annaiyappanaidu, Padmanaban Al-Dayel, Fouad Al-Kuraya, Khawla Sami Sci Rep Article Mutation-induced activation of Wnt-β Catenin signaling pathway is frequent in CRC. The E3 ubiquitin ligase, RNF43, has been reported to negatively regulate the Wnt signaling pathway and RNF43 mutations are frequently seen in CRC. However, its role in Middle Eastern CRC remains unclear. Therefore, we employed Exome and Sanger sequencing technology to assess the frequency of RNF43 mutations and its association with other clinico-pathological features in Middle Eastern CRC. RNF43 mutations were found in 5.9% (13/220) of CRC cases and was inversely correlated to APC and TP53 mutations. A strong association of RNF43 mutations with right sided and sporadic microsatellite instable (MSI) CRC was observed. No association was identified between RNF43 mutation and other clinico-pathological features including BRAF mutation, age, tumor histological subtype, tumor grade or patients’ prognosis. Multivariate logistic regression analysis revealed that MSI status and wild type APC were independent predictor of RNF43 mutation. We conclude that RNF43 mutations occur in Middle Eastern CRC at comparable frequencies with BRAF mutations and represent a distinct molecular subtype which further enhances our understanding of how different mutational subsets of Wnt tumor suppressor genes link to distinct tumor characteristics, which might be considered for treatment strategies for CRC patients. Nature Publishing Group UK 2022-07-30 /pmc/articles/PMC9338933/ /pubmed/35907983 http://dx.doi.org/10.1038/s41598-022-17449-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Siraj, Abdul Khalid
Bu, Rong
Masoodi, Tariq
Parvathareddy, Sandeep Kumar
Iqbal, Kaleem
Al-Haqawi, Wael
Al-Dossari, Hassan
Azam, Saud
Qadri, Zeeshan
Annaiyappanaidu, Padmanaban
Al-Dayel, Fouad
Al-Kuraya, Khawla Sami
Exome sequencing revealed comparable frequencies of RNF43 and BRAF mutations in Middle Eastern colorectal cancer
title Exome sequencing revealed comparable frequencies of RNF43 and BRAF mutations in Middle Eastern colorectal cancer
title_full Exome sequencing revealed comparable frequencies of RNF43 and BRAF mutations in Middle Eastern colorectal cancer
title_fullStr Exome sequencing revealed comparable frequencies of RNF43 and BRAF mutations in Middle Eastern colorectal cancer
title_full_unstemmed Exome sequencing revealed comparable frequencies of RNF43 and BRAF mutations in Middle Eastern colorectal cancer
title_short Exome sequencing revealed comparable frequencies of RNF43 and BRAF mutations in Middle Eastern colorectal cancer
title_sort exome sequencing revealed comparable frequencies of rnf43 and braf mutations in middle eastern colorectal cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9338933/
https://www.ncbi.nlm.nih.gov/pubmed/35907983
http://dx.doi.org/10.1038/s41598-022-17449-9
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