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Identification of Daboia siamensis venome using integrated multi-omics data

Snakebite, classified by World Health Organization as a neglected tropical disease, causes more than 100,000 deaths and 2 million injuries per year. Currently, available antivenoms do not bind with strong specificity to target toxins, which means that severe complications can still occur despite tre...

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Autores principales: Saethang, Thammakorn, Somparn, Poorichaya, Payungporn, Sunchai, Sriswasdi, Sira, Yee, Khin Than, Hodge, Kenneth, Knepper, Mark A., Chanhome, Lawan, Khow, Orawan, Chaiyabutr, Narongsak, Sitprija, Visith, Pisitkun, Trairak
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9338987/
https://www.ncbi.nlm.nih.gov/pubmed/35907887
http://dx.doi.org/10.1038/s41598-022-17300-1
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author Saethang, Thammakorn
Somparn, Poorichaya
Payungporn, Sunchai
Sriswasdi, Sira
Yee, Khin Than
Hodge, Kenneth
Knepper, Mark A.
Chanhome, Lawan
Khow, Orawan
Chaiyabutr, Narongsak
Sitprija, Visith
Pisitkun, Trairak
author_facet Saethang, Thammakorn
Somparn, Poorichaya
Payungporn, Sunchai
Sriswasdi, Sira
Yee, Khin Than
Hodge, Kenneth
Knepper, Mark A.
Chanhome, Lawan
Khow, Orawan
Chaiyabutr, Narongsak
Sitprija, Visith
Pisitkun, Trairak
author_sort Saethang, Thammakorn
collection PubMed
description Snakebite, classified by World Health Organization as a neglected tropical disease, causes more than 100,000 deaths and 2 million injuries per year. Currently, available antivenoms do not bind with strong specificity to target toxins, which means that severe complications can still occur despite treatment. Moreover, the cost of antivenom is expensive. Knowledge of venom compositions is fundamental for producing a specific antivenom that has high effectiveness, low side effects, and ease of manufacture. With advances in mass spectrometry techniques, venom proteomes can now be analyzed in great depth at high efficiency. However, these techniques require genomic and transcriptomic data for interpreting mass spectrometry data. This study aims to establish and incorporate genomics, transcriptomics, and proteomics data to study venomics of a venomous snake, Daboia siamensis. Multiple proteins that have not been reported as venom components of this snake such as hyaluronidase-1, phospholipase B, and waprin were discovered. Thus, multi-omics data are advantageous for venomics studies. These findings will be valuable not only for antivenom production but also for the development of novel therapeutics.
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spelling pubmed-93389872022-08-01 Identification of Daboia siamensis venome using integrated multi-omics data Saethang, Thammakorn Somparn, Poorichaya Payungporn, Sunchai Sriswasdi, Sira Yee, Khin Than Hodge, Kenneth Knepper, Mark A. Chanhome, Lawan Khow, Orawan Chaiyabutr, Narongsak Sitprija, Visith Pisitkun, Trairak Sci Rep Article Snakebite, classified by World Health Organization as a neglected tropical disease, causes more than 100,000 deaths and 2 million injuries per year. Currently, available antivenoms do not bind with strong specificity to target toxins, which means that severe complications can still occur despite treatment. Moreover, the cost of antivenom is expensive. Knowledge of venom compositions is fundamental for producing a specific antivenom that has high effectiveness, low side effects, and ease of manufacture. With advances in mass spectrometry techniques, venom proteomes can now be analyzed in great depth at high efficiency. However, these techniques require genomic and transcriptomic data for interpreting mass spectrometry data. This study aims to establish and incorporate genomics, transcriptomics, and proteomics data to study venomics of a venomous snake, Daboia siamensis. Multiple proteins that have not been reported as venom components of this snake such as hyaluronidase-1, phospholipase B, and waprin were discovered. Thus, multi-omics data are advantageous for venomics studies. These findings will be valuable not only for antivenom production but also for the development of novel therapeutics. Nature Publishing Group UK 2022-07-30 /pmc/articles/PMC9338987/ /pubmed/35907887 http://dx.doi.org/10.1038/s41598-022-17300-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Saethang, Thammakorn
Somparn, Poorichaya
Payungporn, Sunchai
Sriswasdi, Sira
Yee, Khin Than
Hodge, Kenneth
Knepper, Mark A.
Chanhome, Lawan
Khow, Orawan
Chaiyabutr, Narongsak
Sitprija, Visith
Pisitkun, Trairak
Identification of Daboia siamensis venome using integrated multi-omics data
title Identification of Daboia siamensis venome using integrated multi-omics data
title_full Identification of Daboia siamensis venome using integrated multi-omics data
title_fullStr Identification of Daboia siamensis venome using integrated multi-omics data
title_full_unstemmed Identification of Daboia siamensis venome using integrated multi-omics data
title_short Identification of Daboia siamensis venome using integrated multi-omics data
title_sort identification of daboia siamensis venome using integrated multi-omics data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9338987/
https://www.ncbi.nlm.nih.gov/pubmed/35907887
http://dx.doi.org/10.1038/s41598-022-17300-1
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