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Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids

Polymer–protein hybrids are intriguing materials that can bolster protein stability in non-native environments, thereby enhancing their utility in diverse medicinal, commercial, and industrial applications. One stabilization strategy involves designing synthetic random copolymers with compositions a...

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Autores principales: Tamasi, Matthew J., Patel, Roshan A., Borca, Carlos H., Kosuri, Shashank, Mugnier, Heloise, Upadhya, Rahul, Murthy, N. Sanjeeva, Webb, Michael A., Gormley, Adam J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9339531/
https://www.ncbi.nlm.nih.gov/pubmed/35593444
http://dx.doi.org/10.1002/adma.202201809
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author Tamasi, Matthew J.
Patel, Roshan A.
Borca, Carlos H.
Kosuri, Shashank
Mugnier, Heloise
Upadhya, Rahul
Murthy, N. Sanjeeva
Webb, Michael A.
Gormley, Adam J.
author_facet Tamasi, Matthew J.
Patel, Roshan A.
Borca, Carlos H.
Kosuri, Shashank
Mugnier, Heloise
Upadhya, Rahul
Murthy, N. Sanjeeva
Webb, Michael A.
Gormley, Adam J.
author_sort Tamasi, Matthew J.
collection PubMed
description Polymer–protein hybrids are intriguing materials that can bolster protein stability in non-native environments, thereby enhancing their utility in diverse medicinal, commercial, and industrial applications. One stabilization strategy involves designing synthetic random copolymers with compositions attuned to the protein surface, but rational design is complicated by the vast chemical and composition space. Here, a strategy is reported to design protein-stabilizing copolymers based on active machine learning, facilitated by automated material synthesis and characterization platforms. The versatility and robustness of the approach is demonstrated by the successful identification of copolymers that preserve, or even enhance, the activity of three chemically distinct enzymes following exposure to thermal denaturing conditions. Although systematic screening results in mixed success, active learning appropriately identifies unique and effective copolymer chemistries for the stabilization of each enzyme. Overall, this work broadens the capabilities to design fit-for-purpose synthetic copolymers that promote or otherwise manipulate protein activity, with extensions toward the design of robust polymer–protein hybrid materials.
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spelling pubmed-93395312023-07-01 Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids Tamasi, Matthew J. Patel, Roshan A. Borca, Carlos H. Kosuri, Shashank Mugnier, Heloise Upadhya, Rahul Murthy, N. Sanjeeva Webb, Michael A. Gormley, Adam J. Adv Mater Article Polymer–protein hybrids are intriguing materials that can bolster protein stability in non-native environments, thereby enhancing their utility in diverse medicinal, commercial, and industrial applications. One stabilization strategy involves designing synthetic random copolymers with compositions attuned to the protein surface, but rational design is complicated by the vast chemical and composition space. Here, a strategy is reported to design protein-stabilizing copolymers based on active machine learning, facilitated by automated material synthesis and characterization platforms. The versatility and robustness of the approach is demonstrated by the successful identification of copolymers that preserve, or even enhance, the activity of three chemically distinct enzymes following exposure to thermal denaturing conditions. Although systematic screening results in mixed success, active learning appropriately identifies unique and effective copolymer chemistries for the stabilization of each enzyme. Overall, this work broadens the capabilities to design fit-for-purpose synthetic copolymers that promote or otherwise manipulate protein activity, with extensions toward the design of robust polymer–protein hybrid materials. 2022-07 2022-06-11 /pmc/articles/PMC9339531/ /pubmed/35593444 http://dx.doi.org/10.1002/adma.202201809 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Article
Tamasi, Matthew J.
Patel, Roshan A.
Borca, Carlos H.
Kosuri, Shashank
Mugnier, Heloise
Upadhya, Rahul
Murthy, N. Sanjeeva
Webb, Michael A.
Gormley, Adam J.
Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids
title Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids
title_full Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids
title_fullStr Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids
title_full_unstemmed Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids
title_short Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids
title_sort machine learning on a robotic platform for the design of polymer–protein hybrids
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9339531/
https://www.ncbi.nlm.nih.gov/pubmed/35593444
http://dx.doi.org/10.1002/adma.202201809
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