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Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids
Polymer–protein hybrids are intriguing materials that can bolster protein stability in non-native environments, thereby enhancing their utility in diverse medicinal, commercial, and industrial applications. One stabilization strategy involves designing synthetic random copolymers with compositions a...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9339531/ https://www.ncbi.nlm.nih.gov/pubmed/35593444 http://dx.doi.org/10.1002/adma.202201809 |
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author | Tamasi, Matthew J. Patel, Roshan A. Borca, Carlos H. Kosuri, Shashank Mugnier, Heloise Upadhya, Rahul Murthy, N. Sanjeeva Webb, Michael A. Gormley, Adam J. |
author_facet | Tamasi, Matthew J. Patel, Roshan A. Borca, Carlos H. Kosuri, Shashank Mugnier, Heloise Upadhya, Rahul Murthy, N. Sanjeeva Webb, Michael A. Gormley, Adam J. |
author_sort | Tamasi, Matthew J. |
collection | PubMed |
description | Polymer–protein hybrids are intriguing materials that can bolster protein stability in non-native environments, thereby enhancing their utility in diverse medicinal, commercial, and industrial applications. One stabilization strategy involves designing synthetic random copolymers with compositions attuned to the protein surface, but rational design is complicated by the vast chemical and composition space. Here, a strategy is reported to design protein-stabilizing copolymers based on active machine learning, facilitated by automated material synthesis and characterization platforms. The versatility and robustness of the approach is demonstrated by the successful identification of copolymers that preserve, or even enhance, the activity of three chemically distinct enzymes following exposure to thermal denaturing conditions. Although systematic screening results in mixed success, active learning appropriately identifies unique and effective copolymer chemistries for the stabilization of each enzyme. Overall, this work broadens the capabilities to design fit-for-purpose synthetic copolymers that promote or otherwise manipulate protein activity, with extensions toward the design of robust polymer–protein hybrid materials. |
format | Online Article Text |
id | pubmed-9339531 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
record_format | MEDLINE/PubMed |
spelling | pubmed-93395312023-07-01 Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids Tamasi, Matthew J. Patel, Roshan A. Borca, Carlos H. Kosuri, Shashank Mugnier, Heloise Upadhya, Rahul Murthy, N. Sanjeeva Webb, Michael A. Gormley, Adam J. Adv Mater Article Polymer–protein hybrids are intriguing materials that can bolster protein stability in non-native environments, thereby enhancing their utility in diverse medicinal, commercial, and industrial applications. One stabilization strategy involves designing synthetic random copolymers with compositions attuned to the protein surface, but rational design is complicated by the vast chemical and composition space. Here, a strategy is reported to design protein-stabilizing copolymers based on active machine learning, facilitated by automated material synthesis and characterization platforms. The versatility and robustness of the approach is demonstrated by the successful identification of copolymers that preserve, or even enhance, the activity of three chemically distinct enzymes following exposure to thermal denaturing conditions. Although systematic screening results in mixed success, active learning appropriately identifies unique and effective copolymer chemistries for the stabilization of each enzyme. Overall, this work broadens the capabilities to design fit-for-purpose synthetic copolymers that promote or otherwise manipulate protein activity, with extensions toward the design of robust polymer–protein hybrid materials. 2022-07 2022-06-11 /pmc/articles/PMC9339531/ /pubmed/35593444 http://dx.doi.org/10.1002/adma.202201809 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Article Tamasi, Matthew J. Patel, Roshan A. Borca, Carlos H. Kosuri, Shashank Mugnier, Heloise Upadhya, Rahul Murthy, N. Sanjeeva Webb, Michael A. Gormley, Adam J. Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids |
title | Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids |
title_full | Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids |
title_fullStr | Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids |
title_full_unstemmed | Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids |
title_short | Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids |
title_sort | machine learning on a robotic platform for the design of polymer–protein hybrids |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9339531/ https://www.ncbi.nlm.nih.gov/pubmed/35593444 http://dx.doi.org/10.1002/adma.202201809 |
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