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Deep Learning for Automated Contouring of Gross Tumor Volumes in Esophageal Cancer
PURPOSE: The aim of this study was to propose and evaluate a novel three-dimensional (3D) V-Net and two-dimensional (2D) U-Net mixed (VUMix-Net) architecture for a fully automatic and accurate gross tumor volume (GTV) in esophageal cancer (EC)–delineated contours. METHODS: We collected the computed...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9339638/ https://www.ncbi.nlm.nih.gov/pubmed/35924169 http://dx.doi.org/10.3389/fonc.2022.892171 |
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author | Jin, Linzhi Chen, Qi Shi, Aiwei Wang, Xiaomin Ren, Runchuan Zheng, Anping Song, Ping Zhang, Yaowen Wang, Nan Wang, Chenyu Wang, Nengchao Cheng, Xinyu Wang, Shaobin Ge, Hong |
author_facet | Jin, Linzhi Chen, Qi Shi, Aiwei Wang, Xiaomin Ren, Runchuan Zheng, Anping Song, Ping Zhang, Yaowen Wang, Nan Wang, Chenyu Wang, Nengchao Cheng, Xinyu Wang, Shaobin Ge, Hong |
author_sort | Jin, Linzhi |
collection | PubMed |
description | PURPOSE: The aim of this study was to propose and evaluate a novel three-dimensional (3D) V-Net and two-dimensional (2D) U-Net mixed (VUMix-Net) architecture for a fully automatic and accurate gross tumor volume (GTV) in esophageal cancer (EC)–delineated contours. METHODS: We collected the computed tomography (CT) scans of 215 EC patients. 3D V-Net, 2D U-Net, and VUMix-Net were developed and further applied simultaneously to delineate GTVs. The Dice similarity coefficient (DSC) and 95th-percentile Hausdorff distance (95HD) were used as quantitative metrics to evaluate the performance of the three models in ECs from different segments. The CT data of 20 patients were randomly selected as the ground truth (GT) masks, and the corresponding delineation results were generated by artificial intelligence (AI). Score differences between the two groups (GT versus AI) and the evaluation consistency were compared. RESULTS: In all patients, there was a significant difference in the 2D DSCs from U-Net, V-Net, and VUMix-Net (p=0.01). In addition, VUMix-Net showed achieved better 3D-DSC and 95HD values. There was a significant difference among the 3D-DSC (mean ± STD) and 95HD values for upper-, middle-, and lower-segment EC (p<0.001), and the middle EC values were the best. In middle-segment EC, VUMix-Net achieved the highest 2D-DSC values (p<0.001) and lowest 95HD values (p=0.044). CONCLUSION: The new model (VUMix-Net) showed certain advantages in delineating the GTVs of EC. Additionally, it can generate the GTVs of EC that meet clinical requirements and have the same quality as human-generated contours. The system demonstrated the best performance for the ECs of the middle segment. |
format | Online Article Text |
id | pubmed-9339638 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93396382022-08-02 Deep Learning for Automated Contouring of Gross Tumor Volumes in Esophageal Cancer Jin, Linzhi Chen, Qi Shi, Aiwei Wang, Xiaomin Ren, Runchuan Zheng, Anping Song, Ping Zhang, Yaowen Wang, Nan Wang, Chenyu Wang, Nengchao Cheng, Xinyu Wang, Shaobin Ge, Hong Front Oncol Oncology PURPOSE: The aim of this study was to propose and evaluate a novel three-dimensional (3D) V-Net and two-dimensional (2D) U-Net mixed (VUMix-Net) architecture for a fully automatic and accurate gross tumor volume (GTV) in esophageal cancer (EC)–delineated contours. METHODS: We collected the computed tomography (CT) scans of 215 EC patients. 3D V-Net, 2D U-Net, and VUMix-Net were developed and further applied simultaneously to delineate GTVs. The Dice similarity coefficient (DSC) and 95th-percentile Hausdorff distance (95HD) were used as quantitative metrics to evaluate the performance of the three models in ECs from different segments. The CT data of 20 patients were randomly selected as the ground truth (GT) masks, and the corresponding delineation results were generated by artificial intelligence (AI). Score differences between the two groups (GT versus AI) and the evaluation consistency were compared. RESULTS: In all patients, there was a significant difference in the 2D DSCs from U-Net, V-Net, and VUMix-Net (p=0.01). In addition, VUMix-Net showed achieved better 3D-DSC and 95HD values. There was a significant difference among the 3D-DSC (mean ± STD) and 95HD values for upper-, middle-, and lower-segment EC (p<0.001), and the middle EC values were the best. In middle-segment EC, VUMix-Net achieved the highest 2D-DSC values (p<0.001) and lowest 95HD values (p=0.044). CONCLUSION: The new model (VUMix-Net) showed certain advantages in delineating the GTVs of EC. Additionally, it can generate the GTVs of EC that meet clinical requirements and have the same quality as human-generated contours. The system demonstrated the best performance for the ECs of the middle segment. Frontiers Media S.A. 2022-07-18 /pmc/articles/PMC9339638/ /pubmed/35924169 http://dx.doi.org/10.3389/fonc.2022.892171 Text en Copyright © 2022 Jin, Chen, Shi, Wang, Ren, Zheng, Song, Zhang, Wang, Wang, Wang, Cheng, Wang and Ge https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Jin, Linzhi Chen, Qi Shi, Aiwei Wang, Xiaomin Ren, Runchuan Zheng, Anping Song, Ping Zhang, Yaowen Wang, Nan Wang, Chenyu Wang, Nengchao Cheng, Xinyu Wang, Shaobin Ge, Hong Deep Learning for Automated Contouring of Gross Tumor Volumes in Esophageal Cancer |
title | Deep Learning for Automated Contouring of Gross Tumor Volumes in Esophageal Cancer |
title_full | Deep Learning for Automated Contouring of Gross Tumor Volumes in Esophageal Cancer |
title_fullStr | Deep Learning for Automated Contouring of Gross Tumor Volumes in Esophageal Cancer |
title_full_unstemmed | Deep Learning for Automated Contouring of Gross Tumor Volumes in Esophageal Cancer |
title_short | Deep Learning for Automated Contouring of Gross Tumor Volumes in Esophageal Cancer |
title_sort | deep learning for automated contouring of gross tumor volumes in esophageal cancer |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9339638/ https://www.ncbi.nlm.nih.gov/pubmed/35924169 http://dx.doi.org/10.3389/fonc.2022.892171 |
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