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Metabolite profile of COVID-19 revealed by UPLC-MS/MS-based widely targeted metabolomics
The metabolic characteristics of COVID-19 disease are still largely unknown. Here, 44 patients with COVID-19 (31 mild COVID-19 patients and 13 severe COVID-19 patients), 42 healthy controls (HC), and 42 patients with community-acquired pneumonia (CAP), were involved in the study to assess their seru...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9339702/ https://www.ncbi.nlm.nih.gov/pubmed/35924246 http://dx.doi.org/10.3389/fimmu.2022.894170 |
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author | Liu, Jun Li, Zhi-Bin Lu, Qi-Qi Yu, Yi Zhang, Shan-Qiang Ke, Pei-Feng Zhang, Fan Li, Ji-Cheng |
author_facet | Liu, Jun Li, Zhi-Bin Lu, Qi-Qi Yu, Yi Zhang, Shan-Qiang Ke, Pei-Feng Zhang, Fan Li, Ji-Cheng |
author_sort | Liu, Jun |
collection | PubMed |
description | The metabolic characteristics of COVID-19 disease are still largely unknown. Here, 44 patients with COVID-19 (31 mild COVID-19 patients and 13 severe COVID-19 patients), 42 healthy controls (HC), and 42 patients with community-acquired pneumonia (CAP), were involved in the study to assess their serum metabolomic profiles. We used widely targeted metabolomics based on an ultra-performance liquid chromatography–tandem mass spectrometry (UPLC-MS/MS). The differentially expressed metabolites in the plasma of mild and severe COVID-19 patients, CAP patients, and HC subjects were screened, and the main metabolic pathways involved were analyzed. Multiple mature machine learning algorithms confirmed that the metabolites performed excellently in discriminating COVID-19 groups from CAP and HC subjects, with an area under the curve (AUC) of 1. The specific dysregulation of AMP, dGMP, sn-glycero-3-phosphocholine, and carnitine was observed in the severe COVID-19 group. Moreover, random forest analysis suggested that these metabolites could discriminate between severe COVID-19 patients and mild COVID-19 patients, with an AUC of 0.921. This study may broaden our understanding of pathophysiological mechanisms of COVID-19 and may offer an experimental basis for developing novel treatment strategies against it. |
format | Online Article Text |
id | pubmed-9339702 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93397022022-08-02 Metabolite profile of COVID-19 revealed by UPLC-MS/MS-based widely targeted metabolomics Liu, Jun Li, Zhi-Bin Lu, Qi-Qi Yu, Yi Zhang, Shan-Qiang Ke, Pei-Feng Zhang, Fan Li, Ji-Cheng Front Immunol Immunology The metabolic characteristics of COVID-19 disease are still largely unknown. Here, 44 patients with COVID-19 (31 mild COVID-19 patients and 13 severe COVID-19 patients), 42 healthy controls (HC), and 42 patients with community-acquired pneumonia (CAP), were involved in the study to assess their serum metabolomic profiles. We used widely targeted metabolomics based on an ultra-performance liquid chromatography–tandem mass spectrometry (UPLC-MS/MS). The differentially expressed metabolites in the plasma of mild and severe COVID-19 patients, CAP patients, and HC subjects were screened, and the main metabolic pathways involved were analyzed. Multiple mature machine learning algorithms confirmed that the metabolites performed excellently in discriminating COVID-19 groups from CAP and HC subjects, with an area under the curve (AUC) of 1. The specific dysregulation of AMP, dGMP, sn-glycero-3-phosphocholine, and carnitine was observed in the severe COVID-19 group. Moreover, random forest analysis suggested that these metabolites could discriminate between severe COVID-19 patients and mild COVID-19 patients, with an AUC of 0.921. This study may broaden our understanding of pathophysiological mechanisms of COVID-19 and may offer an experimental basis for developing novel treatment strategies against it. Frontiers Media S.A. 2022-07-18 /pmc/articles/PMC9339702/ /pubmed/35924246 http://dx.doi.org/10.3389/fimmu.2022.894170 Text en Copyright © 2022 Liu, Li, Lu, Yu, Zhang, Ke, Zhang and Li https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Liu, Jun Li, Zhi-Bin Lu, Qi-Qi Yu, Yi Zhang, Shan-Qiang Ke, Pei-Feng Zhang, Fan Li, Ji-Cheng Metabolite profile of COVID-19 revealed by UPLC-MS/MS-based widely targeted metabolomics |
title | Metabolite profile of COVID-19 revealed by UPLC-MS/MS-based widely targeted metabolomics |
title_full | Metabolite profile of COVID-19 revealed by UPLC-MS/MS-based widely targeted metabolomics |
title_fullStr | Metabolite profile of COVID-19 revealed by UPLC-MS/MS-based widely targeted metabolomics |
title_full_unstemmed | Metabolite profile of COVID-19 revealed by UPLC-MS/MS-based widely targeted metabolomics |
title_short | Metabolite profile of COVID-19 revealed by UPLC-MS/MS-based widely targeted metabolomics |
title_sort | metabolite profile of covid-19 revealed by uplc-ms/ms-based widely targeted metabolomics |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9339702/ https://www.ncbi.nlm.nih.gov/pubmed/35924246 http://dx.doi.org/10.3389/fimmu.2022.894170 |
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