Complete mitochondrial genome and phylogenetic analysis of the marine red alga Polyopes affinis (Rhodophyta: Halymeniales)

Polyopes affinis ((Harvey) Kawaguchi & Wang, 2002) is a red alga in the order Halymeniales of the phylum Rhodophyta. The entire mitogenome of P. affinis was sequenced and compared to related Halymeniales species. The entire circular-mitogenome is 25,988 bp long, has 27.59% GC content, and compri...

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Autores principales: Patil, Maheshkumar Prakash, Kim, Jong-Oh, Kim, Kyunghoi, Kim, Young-Ryun, Yoon, Seokjin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9341338/
https://www.ncbi.nlm.nih.gov/pubmed/35923632
http://dx.doi.org/10.1080/23802359.2022.2101399
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author Patil, Maheshkumar Prakash
Kim, Jong-Oh
Kim, Kyunghoi
Kim, Young-Ryun
Yoon, Seokjin
author_facet Patil, Maheshkumar Prakash
Kim, Jong-Oh
Kim, Kyunghoi
Kim, Young-Ryun
Yoon, Seokjin
author_sort Patil, Maheshkumar Prakash
collection PubMed
description Polyopes affinis ((Harvey) Kawaguchi & Wang, 2002) is a red alga in the order Halymeniales of the phylum Rhodophyta. The entire mitogenome of P. affinis was sequenced and compared to related Halymeniales species. The entire circular-mitogenome is 25,988 bp long, has 27.59% GC content, and comprises 25 protein-coding genes (CDS), 23 transfer RNA (tRNA) genes, and three ribosomal RNA (rRNA) genes. In terms of gene synteny and tRNA composition, the P. affinis mitogenome differs significantly from that of P. lancifolius. Phylogenetic analysis shows P. affinis mitogenome in a branch sister to P. lancifolius, indicating a close relationship with other Halymeniales species.
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spelling pubmed-93413382022-08-02 Complete mitochondrial genome and phylogenetic analysis of the marine red alga Polyopes affinis (Rhodophyta: Halymeniales) Patil, Maheshkumar Prakash Kim, Jong-Oh Kim, Kyunghoi Kim, Young-Ryun Yoon, Seokjin Mitochondrial DNA B Resour Mitogenome Announcement Polyopes affinis ((Harvey) Kawaguchi & Wang, 2002) is a red alga in the order Halymeniales of the phylum Rhodophyta. The entire mitogenome of P. affinis was sequenced and compared to related Halymeniales species. The entire circular-mitogenome is 25,988 bp long, has 27.59% GC content, and comprises 25 protein-coding genes (CDS), 23 transfer RNA (tRNA) genes, and three ribosomal RNA (rRNA) genes. In terms of gene synteny and tRNA composition, the P. affinis mitogenome differs significantly from that of P. lancifolius. Phylogenetic analysis shows P. affinis mitogenome in a branch sister to P. lancifolius, indicating a close relationship with other Halymeniales species. Taylor & Francis 2022-07-28 /pmc/articles/PMC9341338/ /pubmed/35923632 http://dx.doi.org/10.1080/23802359.2022.2101399 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Patil, Maheshkumar Prakash
Kim, Jong-Oh
Kim, Kyunghoi
Kim, Young-Ryun
Yoon, Seokjin
Complete mitochondrial genome and phylogenetic analysis of the marine red alga Polyopes affinis (Rhodophyta: Halymeniales)
title Complete mitochondrial genome and phylogenetic analysis of the marine red alga Polyopes affinis (Rhodophyta: Halymeniales)
title_full Complete mitochondrial genome and phylogenetic analysis of the marine red alga Polyopes affinis (Rhodophyta: Halymeniales)
title_fullStr Complete mitochondrial genome and phylogenetic analysis of the marine red alga Polyopes affinis (Rhodophyta: Halymeniales)
title_full_unstemmed Complete mitochondrial genome and phylogenetic analysis of the marine red alga Polyopes affinis (Rhodophyta: Halymeniales)
title_short Complete mitochondrial genome and phylogenetic analysis of the marine red alga Polyopes affinis (Rhodophyta: Halymeniales)
title_sort complete mitochondrial genome and phylogenetic analysis of the marine red alga polyopes affinis (rhodophyta: halymeniales)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9341338/
https://www.ncbi.nlm.nih.gov/pubmed/35923632
http://dx.doi.org/10.1080/23802359.2022.2101399
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