The complete mitochondrial genome of the freshwater fish Traccatichthys pulcher (Cypriniformes: Nemacheilidae) from China

This study aimed to sequence and annotate the complete mitochondrial DNA genome sequence of Traccatichthys pulcher. The mitochondrial genome comprised 16,583 bp, harboring 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and a control region. The whole genome contained T (25.8%), C (26...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Xiao Jiang, Song, Lin, Liu, Wen Zhao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9341357/
https://www.ncbi.nlm.nih.gov/pubmed/35923638
http://dx.doi.org/10.1080/23802359.2022.2104669
_version_ 1784760590580842496
author Chen, Xiao Jiang
Song, Lin
Liu, Wen Zhao
author_facet Chen, Xiao Jiang
Song, Lin
Liu, Wen Zhao
author_sort Chen, Xiao Jiang
collection PubMed
description This study aimed to sequence and annotate the complete mitochondrial DNA genome sequence of Traccatichthys pulcher. The mitochondrial genome comprised 16,583 bp, harboring 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and a control region. The whole genome contained T (25.8%), C (26.9%), A (31.4%), and G (15.9%), showing an obvious AT bias (57.2%). Based on the concatenated protein sequences of 13 PCGs, a phylogenetic tree was reconstructed by the maximum likelihood method, and the topology revealed the monophyly of Traccatichthys, and the gathering of T. pulcher and M. pulcher. The mitochondrial DNA of T. pulcher (MZ853162.1) and M. pulcher (NC_031581.1) were aligned by the BLAST 2 sequences tool, which showed 97% similarity.
format Online
Article
Text
id pubmed-9341357
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-93413572022-08-02 The complete mitochondrial genome of the freshwater fish Traccatichthys pulcher (Cypriniformes: Nemacheilidae) from China Chen, Xiao Jiang Song, Lin Liu, Wen Zhao Mitochondrial DNA B Resour Mitogenome Announcement This study aimed to sequence and annotate the complete mitochondrial DNA genome sequence of Traccatichthys pulcher. The mitochondrial genome comprised 16,583 bp, harboring 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and a control region. The whole genome contained T (25.8%), C (26.9%), A (31.4%), and G (15.9%), showing an obvious AT bias (57.2%). Based on the concatenated protein sequences of 13 PCGs, a phylogenetic tree was reconstructed by the maximum likelihood method, and the topology revealed the monophyly of Traccatichthys, and the gathering of T. pulcher and M. pulcher. The mitochondrial DNA of T. pulcher (MZ853162.1) and M. pulcher (NC_031581.1) were aligned by the BLAST 2 sequences tool, which showed 97% similarity. Taylor & Francis 2022-07-29 /pmc/articles/PMC9341357/ /pubmed/35923638 http://dx.doi.org/10.1080/23802359.2022.2104669 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Xiao Jiang
Song, Lin
Liu, Wen Zhao
The complete mitochondrial genome of the freshwater fish Traccatichthys pulcher (Cypriniformes: Nemacheilidae) from China
title The complete mitochondrial genome of the freshwater fish Traccatichthys pulcher (Cypriniformes: Nemacheilidae) from China
title_full The complete mitochondrial genome of the freshwater fish Traccatichthys pulcher (Cypriniformes: Nemacheilidae) from China
title_fullStr The complete mitochondrial genome of the freshwater fish Traccatichthys pulcher (Cypriniformes: Nemacheilidae) from China
title_full_unstemmed The complete mitochondrial genome of the freshwater fish Traccatichthys pulcher (Cypriniformes: Nemacheilidae) from China
title_short The complete mitochondrial genome of the freshwater fish Traccatichthys pulcher (Cypriniformes: Nemacheilidae) from China
title_sort complete mitochondrial genome of the freshwater fish traccatichthys pulcher (cypriniformes: nemacheilidae) from china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9341357/
https://www.ncbi.nlm.nih.gov/pubmed/35923638
http://dx.doi.org/10.1080/23802359.2022.2104669
work_keys_str_mv AT chenxiaojiang thecompletemitochondrialgenomeofthefreshwaterfishtraccatichthyspulchercypriniformesnemacheilidaefromchina
AT songlin thecompletemitochondrialgenomeofthefreshwaterfishtraccatichthyspulchercypriniformesnemacheilidaefromchina
AT liuwenzhao thecompletemitochondrialgenomeofthefreshwaterfishtraccatichthyspulchercypriniformesnemacheilidaefromchina
AT chenxiaojiang completemitochondrialgenomeofthefreshwaterfishtraccatichthyspulchercypriniformesnemacheilidaefromchina
AT songlin completemitochondrialgenomeofthefreshwaterfishtraccatichthyspulchercypriniformesnemacheilidaefromchina
AT liuwenzhao completemitochondrialgenomeofthefreshwaterfishtraccatichthyspulchercypriniformesnemacheilidaefromchina

Ejemplares similares