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Real-time 3D analysis during electron tomography using tomviz

The demand for high-throughput electron tomography is rapidly increasing in biological and material sciences. However, this 3D imaging technique is computationally bottlenecked by alignment and reconstruction which runs from hours to days. We demonstrate real-time tomography with dynamic 3D tomograp...

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Autores principales: Schwartz, Jonathan, Harris, Chris, Pietryga, Jacob, Zheng, Huihuo, Kumar, Prashant, Visheratina, Anastasiia, Kotov, Nicholas A., Major, Brianna, Avery, Patrick, Ercius, Peter, Ayachit, Utkarsh, Geveci, Berk, Muller, David A., Genova, Alessandro, Jiang, Yi, Hanwell, Marcus, Hovden, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9343612/
https://www.ncbi.nlm.nih.gov/pubmed/35915070
http://dx.doi.org/10.1038/s41467-022-32046-0
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author Schwartz, Jonathan
Harris, Chris
Pietryga, Jacob
Zheng, Huihuo
Kumar, Prashant
Visheratina, Anastasiia
Kotov, Nicholas A.
Major, Brianna
Avery, Patrick
Ercius, Peter
Ayachit, Utkarsh
Geveci, Berk
Muller, David A.
Genova, Alessandro
Jiang, Yi
Hanwell, Marcus
Hovden, Robert
author_facet Schwartz, Jonathan
Harris, Chris
Pietryga, Jacob
Zheng, Huihuo
Kumar, Prashant
Visheratina, Anastasiia
Kotov, Nicholas A.
Major, Brianna
Avery, Patrick
Ercius, Peter
Ayachit, Utkarsh
Geveci, Berk
Muller, David A.
Genova, Alessandro
Jiang, Yi
Hanwell, Marcus
Hovden, Robert
author_sort Schwartz, Jonathan
collection PubMed
description The demand for high-throughput electron tomography is rapidly increasing in biological and material sciences. However, this 3D imaging technique is computationally bottlenecked by alignment and reconstruction which runs from hours to days. We demonstrate real-time tomography with dynamic 3D tomographic visualization to enable rapid interpretation of specimen structure immediately as data is collected on an electron microscope. Using geometrically complex chiral nanoparticles, we show volumetric interpretation can begin in less than 10 minutes and a high-quality tomogram is available within 30 minutes. Real-time tomography is integrated into tomviz, an open-source and cross-platform 3D data analysis tool that contains intuitive graphical user interfaces (GUI), to enable any scientist to characterize biological and material structure in 3D.
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spelling pubmed-93436122022-08-03 Real-time 3D analysis during electron tomography using tomviz Schwartz, Jonathan Harris, Chris Pietryga, Jacob Zheng, Huihuo Kumar, Prashant Visheratina, Anastasiia Kotov, Nicholas A. Major, Brianna Avery, Patrick Ercius, Peter Ayachit, Utkarsh Geveci, Berk Muller, David A. Genova, Alessandro Jiang, Yi Hanwell, Marcus Hovden, Robert Nat Commun Article The demand for high-throughput electron tomography is rapidly increasing in biological and material sciences. However, this 3D imaging technique is computationally bottlenecked by alignment and reconstruction which runs from hours to days. We demonstrate real-time tomography with dynamic 3D tomographic visualization to enable rapid interpretation of specimen structure immediately as data is collected on an electron microscope. Using geometrically complex chiral nanoparticles, we show volumetric interpretation can begin in less than 10 minutes and a high-quality tomogram is available within 30 minutes. Real-time tomography is integrated into tomviz, an open-source and cross-platform 3D data analysis tool that contains intuitive graphical user interfaces (GUI), to enable any scientist to characterize biological and material structure in 3D. Nature Publishing Group UK 2022-08-01 /pmc/articles/PMC9343612/ /pubmed/35915070 http://dx.doi.org/10.1038/s41467-022-32046-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Schwartz, Jonathan
Harris, Chris
Pietryga, Jacob
Zheng, Huihuo
Kumar, Prashant
Visheratina, Anastasiia
Kotov, Nicholas A.
Major, Brianna
Avery, Patrick
Ercius, Peter
Ayachit, Utkarsh
Geveci, Berk
Muller, David A.
Genova, Alessandro
Jiang, Yi
Hanwell, Marcus
Hovden, Robert
Real-time 3D analysis during electron tomography using tomviz
title Real-time 3D analysis during electron tomography using tomviz
title_full Real-time 3D analysis during electron tomography using tomviz
title_fullStr Real-time 3D analysis during electron tomography using tomviz
title_full_unstemmed Real-time 3D analysis during electron tomography using tomviz
title_short Real-time 3D analysis during electron tomography using tomviz
title_sort real-time 3d analysis during electron tomography using tomviz
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9343612/
https://www.ncbi.nlm.nih.gov/pubmed/35915070
http://dx.doi.org/10.1038/s41467-022-32046-0
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