Cargando…
The first complete mitochondrial genome data of the pygmy rabbit Brachylagus idahoensis, the world's smallest leporid
The pygmy rabbit Brachylagus idahoensis (Merriam, 1891) is the smallest extant leporid, which naturally occurs in the Great Basin and adjacent areas in western parts of the United States of America. Its distribution is strongly associated with the sagebrush (Artemisia ssp.) vegetation. Here we prese...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9344295/ https://www.ncbi.nlm.nih.gov/pubmed/35928589 http://dx.doi.org/10.1016/j.dib.2022.108314 |
_version_ | 1784761190231048192 |
---|---|
author | Saha, Anwesha Baca, Mateusz Popović, Danijela Mohammadi, Zeinolabedin Olsson, Urban Fostowicz-Frelik, Łucja |
author_facet | Saha, Anwesha Baca, Mateusz Popović, Danijela Mohammadi, Zeinolabedin Olsson, Urban Fostowicz-Frelik, Łucja |
author_sort | Saha, Anwesha |
collection | PubMed |
description | The pygmy rabbit Brachylagus idahoensis (Merriam, 1891) is the smallest extant leporid, which naturally occurs in the Great Basin and adjacent areas in western parts of the United States of America. Its distribution is strongly associated with the sagebrush (Artemisia ssp.) vegetation. Here we present, for the first time, the complete mitochondrial genome of Brachylagus idahoensis, de novo assembled from Illumina short reads of fragmented probe-enriched DNA. The circular mitogenome is 17,021 bp in length and contains 13 protein-coding genes (PCGs), two ribosomal RNAs (16S rRNA and 12S rRNA), 22 transfer RNA genes, and a control region. The gene NAD6 and the tRNA(Gln), tRNA(Ala), tRNA(Asn), tRNA(Cys), tRNA(Tyr), tRNA(Ser), tRNA(Glu) and tRNA(Pro) are encoded on the light strand while the rest are encoded on the heavy strand. The overall nucleotide composition was 30.78% for A, 28.5% for T, 13.62% for G and 27.08% for C. The mitogenome data are available in the GenBank under the accession number OL436257. |
format | Online Article Text |
id | pubmed-9344295 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-93442952022-08-03 The first complete mitochondrial genome data of the pygmy rabbit Brachylagus idahoensis, the world's smallest leporid Saha, Anwesha Baca, Mateusz Popović, Danijela Mohammadi, Zeinolabedin Olsson, Urban Fostowicz-Frelik, Łucja Data Brief Data Article The pygmy rabbit Brachylagus idahoensis (Merriam, 1891) is the smallest extant leporid, which naturally occurs in the Great Basin and adjacent areas in western parts of the United States of America. Its distribution is strongly associated with the sagebrush (Artemisia ssp.) vegetation. Here we present, for the first time, the complete mitochondrial genome of Brachylagus idahoensis, de novo assembled from Illumina short reads of fragmented probe-enriched DNA. The circular mitogenome is 17,021 bp in length and contains 13 protein-coding genes (PCGs), two ribosomal RNAs (16S rRNA and 12S rRNA), 22 transfer RNA genes, and a control region. The gene NAD6 and the tRNA(Gln), tRNA(Ala), tRNA(Asn), tRNA(Cys), tRNA(Tyr), tRNA(Ser), tRNA(Glu) and tRNA(Pro) are encoded on the light strand while the rest are encoded on the heavy strand. The overall nucleotide composition was 30.78% for A, 28.5% for T, 13.62% for G and 27.08% for C. The mitogenome data are available in the GenBank under the accession number OL436257. Elsevier 2022-05-24 /pmc/articles/PMC9344295/ /pubmed/35928589 http://dx.doi.org/10.1016/j.dib.2022.108314 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data Article Saha, Anwesha Baca, Mateusz Popović, Danijela Mohammadi, Zeinolabedin Olsson, Urban Fostowicz-Frelik, Łucja The first complete mitochondrial genome data of the pygmy rabbit Brachylagus idahoensis, the world's smallest leporid |
title | The first complete mitochondrial genome data of the pygmy rabbit Brachylagus idahoensis, the world's smallest leporid |
title_full | The first complete mitochondrial genome data of the pygmy rabbit Brachylagus idahoensis, the world's smallest leporid |
title_fullStr | The first complete mitochondrial genome data of the pygmy rabbit Brachylagus idahoensis, the world's smallest leporid |
title_full_unstemmed | The first complete mitochondrial genome data of the pygmy rabbit Brachylagus idahoensis, the world's smallest leporid |
title_short | The first complete mitochondrial genome data of the pygmy rabbit Brachylagus idahoensis, the world's smallest leporid |
title_sort | first complete mitochondrial genome data of the pygmy rabbit brachylagus idahoensis, the world's smallest leporid |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9344295/ https://www.ncbi.nlm.nih.gov/pubmed/35928589 http://dx.doi.org/10.1016/j.dib.2022.108314 |
work_keys_str_mv | AT sahaanwesha thefirstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT bacamateusz thefirstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT popovicdanijela thefirstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT mohammadizeinolabedin thefirstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT olssonurban thefirstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT fostowiczfrelikłucja thefirstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT sahaanwesha firstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT bacamateusz firstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT popovicdanijela firstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT mohammadizeinolabedin firstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT olssonurban firstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid AT fostowiczfrelikłucja firstcompletemitochondrialgenomedataofthepygmyrabbitbrachylagusidahoensistheworldssmallestleporid |