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A Detailed Overview About the Single-Cell Analyses of Solid Tumors Focusing on Colorectal Cancer

In recent years, the evolution of the molecular biological technical background led to the widespread application of single-cell sequencing, a versatile tool particularly useful in the investigation of tumor heterogeneity. Even 10 years ago the comprehensive characterization of colorectal cancers by...

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Autores principales: Kothalawala, William J., Barták, Barbara K., Nagy, Zsófia B., Zsigrai, Sára, Szigeti, Krisztina A., Valcz, Gábor, Takács, István, Kalmár, Alexandra, Molnár, Béla
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9344373/
https://www.ncbi.nlm.nih.gov/pubmed/35928965
http://dx.doi.org/10.3389/pore.2022.1610342
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author Kothalawala, William J.
Barták, Barbara K.
Nagy, Zsófia B.
Zsigrai, Sára
Szigeti, Krisztina A.
Valcz, Gábor
Takács, István
Kalmár, Alexandra
Molnár, Béla
author_facet Kothalawala, William J.
Barták, Barbara K.
Nagy, Zsófia B.
Zsigrai, Sára
Szigeti, Krisztina A.
Valcz, Gábor
Takács, István
Kalmár, Alexandra
Molnár, Béla
author_sort Kothalawala, William J.
collection PubMed
description In recent years, the evolution of the molecular biological technical background led to the widespread application of single-cell sequencing, a versatile tool particularly useful in the investigation of tumor heterogeneity. Even 10 years ago the comprehensive characterization of colorectal cancers by The Cancer Genome Atlas was based on measurements of bulk samples. Nowadays, with single-cell approaches, tumor heterogeneity, the tumor microenvironment, and the interplay between tumor cells and their surroundings can be described in unprecedented detail. In this review article we aimed to emphasize the importance of single-cell analyses by presenting tumor heterogeneity and the limitations of conventional investigational approaches, followed by an overview of the whole single-cell analytic workflow from sample isolation to amplification, sequencing and bioinformatic analysis and a review of recent literature regarding the single-cell analysis of colorectal cancers.
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spelling pubmed-93443732022-08-03 A Detailed Overview About the Single-Cell Analyses of Solid Tumors Focusing on Colorectal Cancer Kothalawala, William J. Barták, Barbara K. Nagy, Zsófia B. Zsigrai, Sára Szigeti, Krisztina A. Valcz, Gábor Takács, István Kalmár, Alexandra Molnár, Béla Pathol Oncol Res Pathology and Oncology Archive In recent years, the evolution of the molecular biological technical background led to the widespread application of single-cell sequencing, a versatile tool particularly useful in the investigation of tumor heterogeneity. Even 10 years ago the comprehensive characterization of colorectal cancers by The Cancer Genome Atlas was based on measurements of bulk samples. Nowadays, with single-cell approaches, tumor heterogeneity, the tumor microenvironment, and the interplay between tumor cells and their surroundings can be described in unprecedented detail. In this review article we aimed to emphasize the importance of single-cell analyses by presenting tumor heterogeneity and the limitations of conventional investigational approaches, followed by an overview of the whole single-cell analytic workflow from sample isolation to amplification, sequencing and bioinformatic analysis and a review of recent literature regarding the single-cell analysis of colorectal cancers. Frontiers Media S.A. 2022-07-14 /pmc/articles/PMC9344373/ /pubmed/35928965 http://dx.doi.org/10.3389/pore.2022.1610342 Text en Copyright © 2022 Kothalawala, Barták, Nagy, Zsigrai, Szigeti, Valcz, Takács, Kalmár and Molnár. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pathology and Oncology Archive
Kothalawala, William J.
Barták, Barbara K.
Nagy, Zsófia B.
Zsigrai, Sára
Szigeti, Krisztina A.
Valcz, Gábor
Takács, István
Kalmár, Alexandra
Molnár, Béla
A Detailed Overview About the Single-Cell Analyses of Solid Tumors Focusing on Colorectal Cancer
title A Detailed Overview About the Single-Cell Analyses of Solid Tumors Focusing on Colorectal Cancer
title_full A Detailed Overview About the Single-Cell Analyses of Solid Tumors Focusing on Colorectal Cancer
title_fullStr A Detailed Overview About the Single-Cell Analyses of Solid Tumors Focusing on Colorectal Cancer
title_full_unstemmed A Detailed Overview About the Single-Cell Analyses of Solid Tumors Focusing on Colorectal Cancer
title_short A Detailed Overview About the Single-Cell Analyses of Solid Tumors Focusing on Colorectal Cancer
title_sort detailed overview about the single-cell analyses of solid tumors focusing on colorectal cancer
topic Pathology and Oncology Archive
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9344373/
https://www.ncbi.nlm.nih.gov/pubmed/35928965
http://dx.doi.org/10.3389/pore.2022.1610342
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