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Construction of a novel signature and prediction of the immune landscape in gastric cancer based on necroptosis-related genes

Necroptosis, a type of programmed cell death, has become a potential therapeutic target for solid tumors. Nevertheless, the potential roles of necroptosis-related genes (NRGs) in gastric cancer (GC) remain unknown. The objective of the present study was to create a necroptosis-related prognostic sig...

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Autores principales: Li, Zhengtian, Yang, Wenkang, Liu, Dejun, Ye, Weizheng, Du, Gang, Li, Xi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9345982/
https://www.ncbi.nlm.nih.gov/pubmed/35918354
http://dx.doi.org/10.1038/s41598-022-15854-8
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author Li, Zhengtian
Yang, Wenkang
Liu, Dejun
Ye, Weizheng
Du, Gang
Li, Xi
author_facet Li, Zhengtian
Yang, Wenkang
Liu, Dejun
Ye, Weizheng
Du, Gang
Li, Xi
author_sort Li, Zhengtian
collection PubMed
description Necroptosis, a type of programmed cell death, has become a potential therapeutic target for solid tumors. Nevertheless, the potential roles of necroptosis-related genes (NRGs) in gastric cancer (GC) remain unknown. The objective of the present study was to create a necroptosis-related prognostic signature that can provide more accurate assessment of prognosis in GC. Using The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) data, we identified differentially expressed NRGs. Univariate analysis and Lasso regression were performed to determine the prognostic signature. Risk scores were calculated and all GC patients were divided into high- and low-risk score group according to the median risk score value. The robustness of this signature was externally validated with data from GSE84437 cohort (n = 431). Survival analysis revealed high-risk score patients had a worse prognosis. Results evidenced that the signature was an independent prognosis factor for survival. Single-sample sequence set enrichment analysis (ssGSEA) exhibited different enrichment of immune cells and immune-related pathways in the two risk groups. Furthermore, a predictive nomogram was generated and showed excellent predictive performance based on discrimination and calibration. In addition, the risk score positively correlated with tumor mutational burden and was associated with sensitivity to multiple anti-cancer drugs. Overall, our work demonstrates a close relationship between necroptosis and the prognosis of GC. The signature we constructed with potential clinical application value, can be used for prognosis prediction and being a potential therapeutic responses indicator in GC patients.
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spelling pubmed-93459822022-08-04 Construction of a novel signature and prediction of the immune landscape in gastric cancer based on necroptosis-related genes Li, Zhengtian Yang, Wenkang Liu, Dejun Ye, Weizheng Du, Gang Li, Xi Sci Rep Article Necroptosis, a type of programmed cell death, has become a potential therapeutic target for solid tumors. Nevertheless, the potential roles of necroptosis-related genes (NRGs) in gastric cancer (GC) remain unknown. The objective of the present study was to create a necroptosis-related prognostic signature that can provide more accurate assessment of prognosis in GC. Using The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) data, we identified differentially expressed NRGs. Univariate analysis and Lasso regression were performed to determine the prognostic signature. Risk scores were calculated and all GC patients were divided into high- and low-risk score group according to the median risk score value. The robustness of this signature was externally validated with data from GSE84437 cohort (n = 431). Survival analysis revealed high-risk score patients had a worse prognosis. Results evidenced that the signature was an independent prognosis factor for survival. Single-sample sequence set enrichment analysis (ssGSEA) exhibited different enrichment of immune cells and immune-related pathways in the two risk groups. Furthermore, a predictive nomogram was generated and showed excellent predictive performance based on discrimination and calibration. In addition, the risk score positively correlated with tumor mutational burden and was associated with sensitivity to multiple anti-cancer drugs. Overall, our work demonstrates a close relationship between necroptosis and the prognosis of GC. The signature we constructed with potential clinical application value, can be used for prognosis prediction and being a potential therapeutic responses indicator in GC patients. Nature Publishing Group UK 2022-08-02 /pmc/articles/PMC9345982/ /pubmed/35918354 http://dx.doi.org/10.1038/s41598-022-15854-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Li, Zhengtian
Yang, Wenkang
Liu, Dejun
Ye, Weizheng
Du, Gang
Li, Xi
Construction of a novel signature and prediction of the immune landscape in gastric cancer based on necroptosis-related genes
title Construction of a novel signature and prediction of the immune landscape in gastric cancer based on necroptosis-related genes
title_full Construction of a novel signature and prediction of the immune landscape in gastric cancer based on necroptosis-related genes
title_fullStr Construction of a novel signature and prediction of the immune landscape in gastric cancer based on necroptosis-related genes
title_full_unstemmed Construction of a novel signature and prediction of the immune landscape in gastric cancer based on necroptosis-related genes
title_short Construction of a novel signature and prediction of the immune landscape in gastric cancer based on necroptosis-related genes
title_sort construction of a novel signature and prediction of the immune landscape in gastric cancer based on necroptosis-related genes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9345982/
https://www.ncbi.nlm.nih.gov/pubmed/35918354
http://dx.doi.org/10.1038/s41598-022-15854-8
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