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Identification of the immune subtype of ovarian cancer patients by integrated analyses of transcriptome and single-cell sequencing data
Ovarian cancer (OC) is one the most life-threatening cancers affecting women’s health worldwide. Immunotherapy has become a promising treatment for a variety of cancers, but the therapeutic effects in OC remain limited. In this study, we constructed a macrophage risk score (MRS) based on M1 and M2 m...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9346122/ https://www.ncbi.nlm.nih.gov/pubmed/35918500 http://dx.doi.org/10.1038/s41598-022-17645-7 |
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author | Wang, Sixue Wang, Xi Xia, Xiaomeng Zhang, Tingting Yi, Mingyu Li, Zeying Jiang, Li Yang, Yalan Fu, Jie Fang, Xiaoling |
author_facet | Wang, Sixue Wang, Xi Xia, Xiaomeng Zhang, Tingting Yi, Mingyu Li, Zeying Jiang, Li Yang, Yalan Fu, Jie Fang, Xiaoling |
author_sort | Wang, Sixue |
collection | PubMed |
description | Ovarian cancer (OC) is one the most life-threatening cancers affecting women’s health worldwide. Immunotherapy has become a promising treatment for a variety of cancers, but the therapeutic effects in OC remain limited. In this study, we constructed a macrophage risk score (MRS) based on M1 and M2 macrophages and a gene risk score (GRS) based on the prognostic genes associated with MRS. Next, cell–cell communication analysis was performed using single-cell RNA (scRNA) sequencing data. Survival status and immune characteristics were compared between the high- and low-score groups separated by MRS or GRS. Our results suggested that MRS and GRS can identify the immune subtypes of OC patients with better overall survival (OS) and inflammatory immune microenvironment. Moreover, M1 and M2 macrophages may affect the prognosis of OC patients through signal communication with CD8 T cells. Finally, functional differences between the two groups separated by GRS were elucidated. Taken together, this study constructed two useful models for the identification of immune subtypes in OC, which has a better prognosis and may have a sensitive response to immune checkpoint inhibitors (ICIs). The hub genes for the construction of GRS may be potential synergetic targets for immunotherapy in OC patients. |
format | Online Article Text |
id | pubmed-9346122 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-93461222022-08-04 Identification of the immune subtype of ovarian cancer patients by integrated analyses of transcriptome and single-cell sequencing data Wang, Sixue Wang, Xi Xia, Xiaomeng Zhang, Tingting Yi, Mingyu Li, Zeying Jiang, Li Yang, Yalan Fu, Jie Fang, Xiaoling Sci Rep Article Ovarian cancer (OC) is one the most life-threatening cancers affecting women’s health worldwide. Immunotherapy has become a promising treatment for a variety of cancers, but the therapeutic effects in OC remain limited. In this study, we constructed a macrophage risk score (MRS) based on M1 and M2 macrophages and a gene risk score (GRS) based on the prognostic genes associated with MRS. Next, cell–cell communication analysis was performed using single-cell RNA (scRNA) sequencing data. Survival status and immune characteristics were compared between the high- and low-score groups separated by MRS or GRS. Our results suggested that MRS and GRS can identify the immune subtypes of OC patients with better overall survival (OS) and inflammatory immune microenvironment. Moreover, M1 and M2 macrophages may affect the prognosis of OC patients through signal communication with CD8 T cells. Finally, functional differences between the two groups separated by GRS were elucidated. Taken together, this study constructed two useful models for the identification of immune subtypes in OC, which has a better prognosis and may have a sensitive response to immune checkpoint inhibitors (ICIs). The hub genes for the construction of GRS may be potential synergetic targets for immunotherapy in OC patients. Nature Publishing Group UK 2022-08-02 /pmc/articles/PMC9346122/ /pubmed/35918500 http://dx.doi.org/10.1038/s41598-022-17645-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Wang, Sixue Wang, Xi Xia, Xiaomeng Zhang, Tingting Yi, Mingyu Li, Zeying Jiang, Li Yang, Yalan Fu, Jie Fang, Xiaoling Identification of the immune subtype of ovarian cancer patients by integrated analyses of transcriptome and single-cell sequencing data |
title | Identification of the immune subtype of ovarian cancer patients by integrated analyses of transcriptome and single-cell sequencing data |
title_full | Identification of the immune subtype of ovarian cancer patients by integrated analyses of transcriptome and single-cell sequencing data |
title_fullStr | Identification of the immune subtype of ovarian cancer patients by integrated analyses of transcriptome and single-cell sequencing data |
title_full_unstemmed | Identification of the immune subtype of ovarian cancer patients by integrated analyses of transcriptome and single-cell sequencing data |
title_short | Identification of the immune subtype of ovarian cancer patients by integrated analyses of transcriptome and single-cell sequencing data |
title_sort | identification of the immune subtype of ovarian cancer patients by integrated analyses of transcriptome and single-cell sequencing data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9346122/ https://www.ncbi.nlm.nih.gov/pubmed/35918500 http://dx.doi.org/10.1038/s41598-022-17645-7 |
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