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Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk

Cancer is a predominant disease across animals. We applied a comparative genomics approach to systematically characterize genes whose conservation levels correlate positively (PC) or negatively (NC) with cancer resistance estimates across 193 vertebrates. Pathway analysis reveals that NC genes are e...

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Autores principales: Nair, Nishanth Ulhas, Cheng, Kuoyuan, Naddaf, Lamis, Sharon, Elad, Pal, Lipika R., Rajagopal, Padma S., Unterman, Irene, Aldape, Kenneth, Hannenhalli, Sridhar, Day, Chi-Ping, Tabach, Yuval, Ruppin, Eytan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9348801/
https://www.ncbi.nlm.nih.gov/pubmed/35921407
http://dx.doi.org/10.1126/sciadv.abj7176
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author Nair, Nishanth Ulhas
Cheng, Kuoyuan
Naddaf, Lamis
Sharon, Elad
Pal, Lipika R.
Rajagopal, Padma S.
Unterman, Irene
Aldape, Kenneth
Hannenhalli, Sridhar
Day, Chi-Ping
Tabach, Yuval
Ruppin, Eytan
author_facet Nair, Nishanth Ulhas
Cheng, Kuoyuan
Naddaf, Lamis
Sharon, Elad
Pal, Lipika R.
Rajagopal, Padma S.
Unterman, Irene
Aldape, Kenneth
Hannenhalli, Sridhar
Day, Chi-Ping
Tabach, Yuval
Ruppin, Eytan
author_sort Nair, Nishanth Ulhas
collection PubMed
description Cancer is a predominant disease across animals. We applied a comparative genomics approach to systematically characterize genes whose conservation levels correlate positively (PC) or negatively (NC) with cancer resistance estimates across 193 vertebrates. Pathway analysis reveals that NC genes are enriched for metabolic functions and PC genes in cell cycle regulation, DNA repair, and immune response, pointing to their corresponding roles in mediating cancer risk. We find that PC genes are less tolerant to loss-of-function (LoF) mutations, are enriched in cancer driver genes, and are associated with germline mutations that increase human cancer risk. Their relevance to cancer risk is further supported via the analysis of mouse functional genomics and cancer mortality of zoo mammals’ data. In sum, our study describes a cross-species genomic analysis pointing to candidate genes that may mediate human cancer risk.
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spelling pubmed-93488012022-08-18 Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk Nair, Nishanth Ulhas Cheng, Kuoyuan Naddaf, Lamis Sharon, Elad Pal, Lipika R. Rajagopal, Padma S. Unterman, Irene Aldape, Kenneth Hannenhalli, Sridhar Day, Chi-Ping Tabach, Yuval Ruppin, Eytan Sci Adv Biomedicine and Life Sciences Cancer is a predominant disease across animals. We applied a comparative genomics approach to systematically characterize genes whose conservation levels correlate positively (PC) or negatively (NC) with cancer resistance estimates across 193 vertebrates. Pathway analysis reveals that NC genes are enriched for metabolic functions and PC genes in cell cycle regulation, DNA repair, and immune response, pointing to their corresponding roles in mediating cancer risk. We find that PC genes are less tolerant to loss-of-function (LoF) mutations, are enriched in cancer driver genes, and are associated with germline mutations that increase human cancer risk. Their relevance to cancer risk is further supported via the analysis of mouse functional genomics and cancer mortality of zoo mammals’ data. In sum, our study describes a cross-species genomic analysis pointing to candidate genes that may mediate human cancer risk. American Association for the Advancement of Science 2022-08-03 /pmc/articles/PMC9348801/ /pubmed/35921407 http://dx.doi.org/10.1126/sciadv.abj7176 Text en Copyright © 2022 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (https://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.
spellingShingle Biomedicine and Life Sciences
Nair, Nishanth Ulhas
Cheng, Kuoyuan
Naddaf, Lamis
Sharon, Elad
Pal, Lipika R.
Rajagopal, Padma S.
Unterman, Irene
Aldape, Kenneth
Hannenhalli, Sridhar
Day, Chi-Ping
Tabach, Yuval
Ruppin, Eytan
Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk
title Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk
title_full Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk
title_fullStr Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk
title_full_unstemmed Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk
title_short Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk
title_sort cross-species identification of cancer resistance–associated genes that may mediate human cancer risk
topic Biomedicine and Life Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9348801/
https://www.ncbi.nlm.nih.gov/pubmed/35921407
http://dx.doi.org/10.1126/sciadv.abj7176
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