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Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk
Cancer is a predominant disease across animals. We applied a comparative genomics approach to systematically characterize genes whose conservation levels correlate positively (PC) or negatively (NC) with cancer resistance estimates across 193 vertebrates. Pathway analysis reveals that NC genes are e...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Association for the Advancement of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9348801/ https://www.ncbi.nlm.nih.gov/pubmed/35921407 http://dx.doi.org/10.1126/sciadv.abj7176 |
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author | Nair, Nishanth Ulhas Cheng, Kuoyuan Naddaf, Lamis Sharon, Elad Pal, Lipika R. Rajagopal, Padma S. Unterman, Irene Aldape, Kenneth Hannenhalli, Sridhar Day, Chi-Ping Tabach, Yuval Ruppin, Eytan |
author_facet | Nair, Nishanth Ulhas Cheng, Kuoyuan Naddaf, Lamis Sharon, Elad Pal, Lipika R. Rajagopal, Padma S. Unterman, Irene Aldape, Kenneth Hannenhalli, Sridhar Day, Chi-Ping Tabach, Yuval Ruppin, Eytan |
author_sort | Nair, Nishanth Ulhas |
collection | PubMed |
description | Cancer is a predominant disease across animals. We applied a comparative genomics approach to systematically characterize genes whose conservation levels correlate positively (PC) or negatively (NC) with cancer resistance estimates across 193 vertebrates. Pathway analysis reveals that NC genes are enriched for metabolic functions and PC genes in cell cycle regulation, DNA repair, and immune response, pointing to their corresponding roles in mediating cancer risk. We find that PC genes are less tolerant to loss-of-function (LoF) mutations, are enriched in cancer driver genes, and are associated with germline mutations that increase human cancer risk. Their relevance to cancer risk is further supported via the analysis of mouse functional genomics and cancer mortality of zoo mammals’ data. In sum, our study describes a cross-species genomic analysis pointing to candidate genes that may mediate human cancer risk. |
format | Online Article Text |
id | pubmed-9348801 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Association for the Advancement of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-93488012022-08-18 Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk Nair, Nishanth Ulhas Cheng, Kuoyuan Naddaf, Lamis Sharon, Elad Pal, Lipika R. Rajagopal, Padma S. Unterman, Irene Aldape, Kenneth Hannenhalli, Sridhar Day, Chi-Ping Tabach, Yuval Ruppin, Eytan Sci Adv Biomedicine and Life Sciences Cancer is a predominant disease across animals. We applied a comparative genomics approach to systematically characterize genes whose conservation levels correlate positively (PC) or negatively (NC) with cancer resistance estimates across 193 vertebrates. Pathway analysis reveals that NC genes are enriched for metabolic functions and PC genes in cell cycle regulation, DNA repair, and immune response, pointing to their corresponding roles in mediating cancer risk. We find that PC genes are less tolerant to loss-of-function (LoF) mutations, are enriched in cancer driver genes, and are associated with germline mutations that increase human cancer risk. Their relevance to cancer risk is further supported via the analysis of mouse functional genomics and cancer mortality of zoo mammals’ data. In sum, our study describes a cross-species genomic analysis pointing to candidate genes that may mediate human cancer risk. American Association for the Advancement of Science 2022-08-03 /pmc/articles/PMC9348801/ /pubmed/35921407 http://dx.doi.org/10.1126/sciadv.abj7176 Text en Copyright © 2022 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (https://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited. |
spellingShingle | Biomedicine and Life Sciences Nair, Nishanth Ulhas Cheng, Kuoyuan Naddaf, Lamis Sharon, Elad Pal, Lipika R. Rajagopal, Padma S. Unterman, Irene Aldape, Kenneth Hannenhalli, Sridhar Day, Chi-Ping Tabach, Yuval Ruppin, Eytan Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk |
title | Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk |
title_full | Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk |
title_fullStr | Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk |
title_full_unstemmed | Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk |
title_short | Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk |
title_sort | cross-species identification of cancer resistance–associated genes that may mediate human cancer risk |
topic | Biomedicine and Life Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9348801/ https://www.ncbi.nlm.nih.gov/pubmed/35921407 http://dx.doi.org/10.1126/sciadv.abj7176 |
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