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Prognostic model of immune-related genes for patients with hepatocellular carcinoma
BACKGROUND: Immune-related genes (IRGs) are closely connected to the occurrence and development of tumors. Their influence on the prognosis of patients with HCC, however, remains unclear. METHODS: From the TCGA database, we integrated 365 liver cancer tissues and 50 normal tissues to identify differ...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9349350/ https://www.ncbi.nlm.nih.gov/pubmed/35937592 http://dx.doi.org/10.3389/fsurg.2022.819491 |
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author | Cai, Qun Duan, Jinnan Ding, Liang |
author_facet | Cai, Qun Duan, Jinnan Ding, Liang |
author_sort | Cai, Qun |
collection | PubMed |
description | BACKGROUND: Immune-related genes (IRGs) are closely connected to the occurrence and development of tumors. Their influence on the prognosis of patients with HCC, however, remains unclear. METHODS: From the TCGA database, we integrated 365 liver cancer tissues and 50 normal tissues to identify differential immune genes related to prognosis. Multivariate COX analysis was used to establish a new prognostic index on account of IRGs, whereby risk score = (Expression level of HSPA4*0.022) + (Expression level of PSMD14*0.042) + (Expression level of RBP2*0.019) + (Expression level of MAPT*0.197) + (Expression level of TRAF3*0.146) + (Expression level of NDRG1*(0.006) + (Expression level of NRAS*0.027) + (Expression level of IL17D*0.075). RESULTS: The risk score was clearly correlated with an unfavorable survival rate and with clinical characteristics. By integrating the immune-related risk score model with clinical features, a nomogram was constructed to predict the survival rate of HCC patients (1-, 3- and 5-year AUC of 0.721, 0.747 and 0.781, respectively). CONCLUSION: We have established a valuable prognostic risk score for HCC patients that may be a better predictor of survival than the present method. With the risk score's strong predictive value for immune cells and functions, it may provide clinical guidance for the diagnosis and prognosis of different immunophenotypes, and provide multiple therapeutic targets for the treatment of HCC patients based on subtype-specific immune molecules. |
format | Online Article Text |
id | pubmed-9349350 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93493502022-08-05 Prognostic model of immune-related genes for patients with hepatocellular carcinoma Cai, Qun Duan, Jinnan Ding, Liang Front Surg Surgery BACKGROUND: Immune-related genes (IRGs) are closely connected to the occurrence and development of tumors. Their influence on the prognosis of patients with HCC, however, remains unclear. METHODS: From the TCGA database, we integrated 365 liver cancer tissues and 50 normal tissues to identify differential immune genes related to prognosis. Multivariate COX analysis was used to establish a new prognostic index on account of IRGs, whereby risk score = (Expression level of HSPA4*0.022) + (Expression level of PSMD14*0.042) + (Expression level of RBP2*0.019) + (Expression level of MAPT*0.197) + (Expression level of TRAF3*0.146) + (Expression level of NDRG1*(0.006) + (Expression level of NRAS*0.027) + (Expression level of IL17D*0.075). RESULTS: The risk score was clearly correlated with an unfavorable survival rate and with clinical characteristics. By integrating the immune-related risk score model with clinical features, a nomogram was constructed to predict the survival rate of HCC patients (1-, 3- and 5-year AUC of 0.721, 0.747 and 0.781, respectively). CONCLUSION: We have established a valuable prognostic risk score for HCC patients that may be a better predictor of survival than the present method. With the risk score's strong predictive value for immune cells and functions, it may provide clinical guidance for the diagnosis and prognosis of different immunophenotypes, and provide multiple therapeutic targets for the treatment of HCC patients based on subtype-specific immune molecules. Frontiers Media S.A. 2022-07-21 /pmc/articles/PMC9349350/ /pubmed/35937592 http://dx.doi.org/10.3389/fsurg.2022.819491 Text en © 2022 Cai, Duan and Ding. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Surgery Cai, Qun Duan, Jinnan Ding, Liang Prognostic model of immune-related genes for patients with hepatocellular carcinoma |
title | Prognostic model of immune-related genes for patients with hepatocellular carcinoma |
title_full | Prognostic model of immune-related genes for patients with hepatocellular carcinoma |
title_fullStr | Prognostic model of immune-related genes for patients with hepatocellular carcinoma |
title_full_unstemmed | Prognostic model of immune-related genes for patients with hepatocellular carcinoma |
title_short | Prognostic model of immune-related genes for patients with hepatocellular carcinoma |
title_sort | prognostic model of immune-related genes for patients with hepatocellular carcinoma |
topic | Surgery |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9349350/ https://www.ncbi.nlm.nih.gov/pubmed/35937592 http://dx.doi.org/10.3389/fsurg.2022.819491 |
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