Cargando…

Prognostic model of immune-related genes for patients with hepatocellular carcinoma

BACKGROUND: Immune-related genes (IRGs) are closely connected to the occurrence and development of tumors. Their influence on the prognosis of patients with HCC, however, remains unclear. METHODS: From the TCGA database, we integrated 365 liver cancer tissues and 50 normal tissues to identify differ...

Descripción completa

Detalles Bibliográficos
Autores principales: Cai, Qun, Duan, Jinnan, Ding, Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9349350/
https://www.ncbi.nlm.nih.gov/pubmed/35937592
http://dx.doi.org/10.3389/fsurg.2022.819491
_version_ 1784762110833590272
author Cai, Qun
Duan, Jinnan
Ding, Liang
author_facet Cai, Qun
Duan, Jinnan
Ding, Liang
author_sort Cai, Qun
collection PubMed
description BACKGROUND: Immune-related genes (IRGs) are closely connected to the occurrence and development of tumors. Their influence on the prognosis of patients with HCC, however, remains unclear. METHODS: From the TCGA database, we integrated 365 liver cancer tissues and 50 normal tissues to identify differential immune genes related to prognosis. Multivariate COX analysis was used to establish a new prognostic index on account of IRGs, whereby risk score = (Expression level of HSPA4*0.022) + (Expression level of PSMD14*0.042) + (Expression level of RBP2*0.019) + (Expression level of MAPT*0.197) + (Expression level of TRAF3*0.146) + (Expression level of NDRG1*(0.006) + (Expression level of NRAS*0.027) + (Expression level of IL17D*0.075). RESULTS: The risk score was clearly correlated with an unfavorable survival rate and with clinical characteristics. By integrating the immune-related risk score model with clinical features, a nomogram was constructed to predict the survival rate of HCC patients (1-, 3- and 5-year AUC of 0.721, 0.747 and 0.781, respectively). CONCLUSION: We have established a valuable prognostic risk score for HCC patients that may be a better predictor of survival than the present method. With the risk score's strong predictive value for immune cells and functions, it may provide clinical guidance for the diagnosis and prognosis of different immunophenotypes, and provide multiple therapeutic targets for the treatment of HCC patients based on subtype-specific immune molecules.
format Online
Article
Text
id pubmed-9349350
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-93493502022-08-05 Prognostic model of immune-related genes for patients with hepatocellular carcinoma Cai, Qun Duan, Jinnan Ding, Liang Front Surg Surgery BACKGROUND: Immune-related genes (IRGs) are closely connected to the occurrence and development of tumors. Their influence on the prognosis of patients with HCC, however, remains unclear. METHODS: From the TCGA database, we integrated 365 liver cancer tissues and 50 normal tissues to identify differential immune genes related to prognosis. Multivariate COX analysis was used to establish a new prognostic index on account of IRGs, whereby risk score = (Expression level of HSPA4*0.022) + (Expression level of PSMD14*0.042) + (Expression level of RBP2*0.019) + (Expression level of MAPT*0.197) + (Expression level of TRAF3*0.146) + (Expression level of NDRG1*(0.006) + (Expression level of NRAS*0.027) + (Expression level of IL17D*0.075). RESULTS: The risk score was clearly correlated with an unfavorable survival rate and with clinical characteristics. By integrating the immune-related risk score model with clinical features, a nomogram was constructed to predict the survival rate of HCC patients (1-, 3- and 5-year AUC of 0.721, 0.747 and 0.781, respectively). CONCLUSION: We have established a valuable prognostic risk score for HCC patients that may be a better predictor of survival than the present method. With the risk score's strong predictive value for immune cells and functions, it may provide clinical guidance for the diagnosis and prognosis of different immunophenotypes, and provide multiple therapeutic targets for the treatment of HCC patients based on subtype-specific immune molecules. Frontiers Media S.A. 2022-07-21 /pmc/articles/PMC9349350/ /pubmed/35937592 http://dx.doi.org/10.3389/fsurg.2022.819491 Text en © 2022 Cai, Duan and Ding. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Surgery
Cai, Qun
Duan, Jinnan
Ding, Liang
Prognostic model of immune-related genes for patients with hepatocellular carcinoma
title Prognostic model of immune-related genes for patients with hepatocellular carcinoma
title_full Prognostic model of immune-related genes for patients with hepatocellular carcinoma
title_fullStr Prognostic model of immune-related genes for patients with hepatocellular carcinoma
title_full_unstemmed Prognostic model of immune-related genes for patients with hepatocellular carcinoma
title_short Prognostic model of immune-related genes for patients with hepatocellular carcinoma
title_sort prognostic model of immune-related genes for patients with hepatocellular carcinoma
topic Surgery
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9349350/
https://www.ncbi.nlm.nih.gov/pubmed/35937592
http://dx.doi.org/10.3389/fsurg.2022.819491
work_keys_str_mv AT caiqun prognosticmodelofimmunerelatedgenesforpatientswithhepatocellularcarcinoma
AT duanjinnan prognosticmodelofimmunerelatedgenesforpatientswithhepatocellularcarcinoma
AT dingliang prognosticmodelofimmunerelatedgenesforpatientswithhepatocellularcarcinoma