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ReviewR: a light-weight and extensible tool for manual review of clinical records
OBJECTIVES: Manual record review is a crucial step for electronic health record (EHR)-based research, but it has poor workflows and is error prone. We sought to build a tool that provides a unified environment for data review and chart abstraction data entry. MATERIALS AND METHODS: ReviewR is an ope...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9350014/ https://www.ncbi.nlm.nih.gov/pubmed/35936991 http://dx.doi.org/10.1093/jamiaopen/ooac071 |
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author | Mayer, David A Rasmussen, Luke V Roark, Christopher D Kahn, Michael G Schilling, Lisa M Wiley, Laura K |
author_facet | Mayer, David A Rasmussen, Luke V Roark, Christopher D Kahn, Michael G Schilling, Lisa M Wiley, Laura K |
author_sort | Mayer, David A |
collection | PubMed |
description | OBJECTIVES: Manual record review is a crucial step for electronic health record (EHR)-based research, but it has poor workflows and is error prone. We sought to build a tool that provides a unified environment for data review and chart abstraction data entry. MATERIALS AND METHODS: ReviewR is an open-source R Shiny application that can be deployed on a single machine or made available to multiple users. It supports multiple data models and database systems, and integrates with the REDCap API for storing abstraction results. RESULTS: We describe 2 real-world uses and extensions of ReviewR. Since its release in April 2021 as a package on CRAN it has been downloaded 2204 times. DISCUSSION AND CONCLUSION: ReviewR provides an easily accessible review interface for clinical data warehouses. Its modular, extensible, and open source nature afford future expansion by other researchers. |
format | Online Article Text |
id | pubmed-9350014 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-93500142022-08-05 ReviewR: a light-weight and extensible tool for manual review of clinical records Mayer, David A Rasmussen, Luke V Roark, Christopher D Kahn, Michael G Schilling, Lisa M Wiley, Laura K JAMIA Open Application Notes OBJECTIVES: Manual record review is a crucial step for electronic health record (EHR)-based research, but it has poor workflows and is error prone. We sought to build a tool that provides a unified environment for data review and chart abstraction data entry. MATERIALS AND METHODS: ReviewR is an open-source R Shiny application that can be deployed on a single machine or made available to multiple users. It supports multiple data models and database systems, and integrates with the REDCap API for storing abstraction results. RESULTS: We describe 2 real-world uses and extensions of ReviewR. Since its release in April 2021 as a package on CRAN it has been downloaded 2204 times. DISCUSSION AND CONCLUSION: ReviewR provides an easily accessible review interface for clinical data warehouses. Its modular, extensible, and open source nature afford future expansion by other researchers. Oxford University Press 2022-08-03 /pmc/articles/PMC9350014/ /pubmed/35936991 http://dx.doi.org/10.1093/jamiaopen/ooac071 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Application Notes Mayer, David A Rasmussen, Luke V Roark, Christopher D Kahn, Michael G Schilling, Lisa M Wiley, Laura K ReviewR: a light-weight and extensible tool for manual review of clinical records |
title | ReviewR: a light-weight and extensible tool for manual review of clinical records |
title_full | ReviewR: a light-weight and extensible tool for manual review of clinical records |
title_fullStr | ReviewR: a light-weight and extensible tool for manual review of clinical records |
title_full_unstemmed | ReviewR: a light-weight and extensible tool for manual review of clinical records |
title_short | ReviewR: a light-weight and extensible tool for manual review of clinical records |
title_sort | reviewr: a light-weight and extensible tool for manual review of clinical records |
topic | Application Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9350014/ https://www.ncbi.nlm.nih.gov/pubmed/35936991 http://dx.doi.org/10.1093/jamiaopen/ooac071 |
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