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Construction of a Medical Micro-Object Cascade Network for Automated Segmentation of Cerebral Microbleeds in Susceptibility Weighted Imaging

Aim: The detection and segmentation of cerebral microbleeds (CMBs) images are the focus of clinical diagnosis and treatment. However, segmentation is difficult in clinical practice, and missed diagnosis may occur. Few related studies on the automated segmentation of CMB images have been performed, a...

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Autores principales: Wei, Zeliang, Chen, Xicheng, Huang, Jialu, Wang, Zhenyan, Yao, Tianhua, Gao, Chengcheng, Wang, Haojia, Li, Pengpeng, Ye, Wei, Li, Yang, Yao, Ning, Zhang, Rui, Tang, Ning, Wang, Fei, Hu, Jun, Yi, Dong, Wu, Yazhou
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9350526/
https://www.ncbi.nlm.nih.gov/pubmed/35935490
http://dx.doi.org/10.3389/fbioe.2022.937314
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author Wei, Zeliang
Chen, Xicheng
Huang, Jialu
Wang, Zhenyan
Yao, Tianhua
Gao, Chengcheng
Wang, Haojia
Li, Pengpeng
Ye, Wei
Li, Yang
Yao, Ning
Zhang, Rui
Tang, Ning
Wang, Fei
Hu, Jun
Yi, Dong
Wu, Yazhou
author_facet Wei, Zeliang
Chen, Xicheng
Huang, Jialu
Wang, Zhenyan
Yao, Tianhua
Gao, Chengcheng
Wang, Haojia
Li, Pengpeng
Ye, Wei
Li, Yang
Yao, Ning
Zhang, Rui
Tang, Ning
Wang, Fei
Hu, Jun
Yi, Dong
Wu, Yazhou
author_sort Wei, Zeliang
collection PubMed
description Aim: The detection and segmentation of cerebral microbleeds (CMBs) images are the focus of clinical diagnosis and treatment. However, segmentation is difficult in clinical practice, and missed diagnosis may occur. Few related studies on the automated segmentation of CMB images have been performed, and we provide the most effective CMB segmentation to date using an automated segmentation system. Materials and Methods: From a research perspective, we focused on the automated segmentation of CMB targets in susceptibility weighted imaging (SWI) for the first time and then constructed a deep learning network focused on the segmentation of micro-objects. We collected and marked clinical datasets and proposed a new medical micro-object cascade network (MMOC-Net). In the first stage, U-Net was utilized to select the region of interest (ROI). In the second stage, we utilized a full-resolution network (FRN) to complete fine segmentation. We also incorporated residual atrous spatial pyramid pooling (R-ASPP) and a new joint loss function. Results: The most suitable segmentation result was achieved with a ROI size of 32 × 32. To verify the validity of each part of the method, ablation studies were performed, which showed that the best segmentation results were obtained when FRN, R-ASPP and the combined loss function were used simultaneously. Under these conditions, the obtained Dice similarity coefficient (DSC) value was 87.93% and the F2-score (F2) value was 90.69%. We also innovatively developed a visual clinical diagnosis system that can provide effective support for clinical diagnosis and treatment decisions. Conclusions: We created the MMOC-Net method to perform the automated segmentation task of CMBs in an SWI and obtained better segmentation performance; hence, this pioneering method has research significance.
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spelling pubmed-93505262022-08-05 Construction of a Medical Micro-Object Cascade Network for Automated Segmentation of Cerebral Microbleeds in Susceptibility Weighted Imaging Wei, Zeliang Chen, Xicheng Huang, Jialu Wang, Zhenyan Yao, Tianhua Gao, Chengcheng Wang, Haojia Li, Pengpeng Ye, Wei Li, Yang Yao, Ning Zhang, Rui Tang, Ning Wang, Fei Hu, Jun Yi, Dong Wu, Yazhou Front Bioeng Biotechnol Bioengineering and Biotechnology Aim: The detection and segmentation of cerebral microbleeds (CMBs) images are the focus of clinical diagnosis and treatment. However, segmentation is difficult in clinical practice, and missed diagnosis may occur. Few related studies on the automated segmentation of CMB images have been performed, and we provide the most effective CMB segmentation to date using an automated segmentation system. Materials and Methods: From a research perspective, we focused on the automated segmentation of CMB targets in susceptibility weighted imaging (SWI) for the first time and then constructed a deep learning network focused on the segmentation of micro-objects. We collected and marked clinical datasets and proposed a new medical micro-object cascade network (MMOC-Net). In the first stage, U-Net was utilized to select the region of interest (ROI). In the second stage, we utilized a full-resolution network (FRN) to complete fine segmentation. We also incorporated residual atrous spatial pyramid pooling (R-ASPP) and a new joint loss function. Results: The most suitable segmentation result was achieved with a ROI size of 32 × 32. To verify the validity of each part of the method, ablation studies were performed, which showed that the best segmentation results were obtained when FRN, R-ASPP and the combined loss function were used simultaneously. Under these conditions, the obtained Dice similarity coefficient (DSC) value was 87.93% and the F2-score (F2) value was 90.69%. We also innovatively developed a visual clinical diagnosis system that can provide effective support for clinical diagnosis and treatment decisions. Conclusions: We created the MMOC-Net method to perform the automated segmentation task of CMBs in an SWI and obtained better segmentation performance; hence, this pioneering method has research significance. Frontiers Media S.A. 2022-07-20 /pmc/articles/PMC9350526/ /pubmed/35935490 http://dx.doi.org/10.3389/fbioe.2022.937314 Text en Copyright © 2022 Wei, Chen, Huang, Wang, Yao, Gao, Wang, Li, Ye, Li, Yao, Zhang, Tang, Wang, Hu, Yi and Wu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioengineering and Biotechnology
Wei, Zeliang
Chen, Xicheng
Huang, Jialu
Wang, Zhenyan
Yao, Tianhua
Gao, Chengcheng
Wang, Haojia
Li, Pengpeng
Ye, Wei
Li, Yang
Yao, Ning
Zhang, Rui
Tang, Ning
Wang, Fei
Hu, Jun
Yi, Dong
Wu, Yazhou
Construction of a Medical Micro-Object Cascade Network for Automated Segmentation of Cerebral Microbleeds in Susceptibility Weighted Imaging
title Construction of a Medical Micro-Object Cascade Network for Automated Segmentation of Cerebral Microbleeds in Susceptibility Weighted Imaging
title_full Construction of a Medical Micro-Object Cascade Network for Automated Segmentation of Cerebral Microbleeds in Susceptibility Weighted Imaging
title_fullStr Construction of a Medical Micro-Object Cascade Network for Automated Segmentation of Cerebral Microbleeds in Susceptibility Weighted Imaging
title_full_unstemmed Construction of a Medical Micro-Object Cascade Network for Automated Segmentation of Cerebral Microbleeds in Susceptibility Weighted Imaging
title_short Construction of a Medical Micro-Object Cascade Network for Automated Segmentation of Cerebral Microbleeds in Susceptibility Weighted Imaging
title_sort construction of a medical micro-object cascade network for automated segmentation of cerebral microbleeds in susceptibility weighted imaging
topic Bioengineering and Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9350526/
https://www.ncbi.nlm.nih.gov/pubmed/35935490
http://dx.doi.org/10.3389/fbioe.2022.937314
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