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Meshless Monte Carlo radiation transfer method for curved geometries using signed distance functions
SIGNIFICANCE: Monte Carlo radiation transfer (MCRT) is the gold standard for modeling light transport in turbid media. Typical MCRT models use voxels or meshes to approximate experimental geometry. A voxel-based geometry does not allow for the precise modeling of smooth curved surfaces, such as may...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9350858/ https://www.ncbi.nlm.nih.gov/pubmed/35927789 http://dx.doi.org/10.1117/1.JBO.27.8.083003 |
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author | McMillan, Lewis Bruce, Graham D. Dholakia, Kishan |
author_facet | McMillan, Lewis Bruce, Graham D. Dholakia, Kishan |
author_sort | McMillan, Lewis |
collection | PubMed |
description | SIGNIFICANCE: Monte Carlo radiation transfer (MCRT) is the gold standard for modeling light transport in turbid media. Typical MCRT models use voxels or meshes to approximate experimental geometry. A voxel-based geometry does not allow for the precise modeling of smooth curved surfaces, such as may be found in biological systems or food and drink packaging. Mesh-based geometry allows arbitrary complex shapes with smooth curved surfaces to be modeled. However, mesh-based models also suffer from issues such as the computational cost of generating meshes and inaccuracies in how meshes handle reflections and refractions. AIM: We present our algorithm, which we term signedMCRT (sMCRT), a geometry-based method that uses signed distance functions (SDF) to represent the geometry of the model. SDFs are capable of modeling smooth curved surfaces precisely while also modeling complex geometries. APPROACH: We show that using SDFs to represent the problem’s geometry is more precise than voxel and mesh-based methods. RESULTS: sMCRT is validated against theoretical expressions, and voxel and mesh-based MCRT codes. We show that sMCRT can precisely model arbitrary complex geometries such as microvascular vessel network using SDFs. In comparison with the current state-of-the-art in MCRT methods specifically for curved surfaces, sMCRT is more precise for cases where the geometry can be defined using combinations of shapes. CONCLUSIONS: We believe that SDF-based MCRT models are a complementary method to voxel and mesh models in terms of being able to model complex geometries and accurately treat curved surfaces, with a focus on precise simulation of reflections and refractions. sMCRT is publicly available at https://github.com/lewisfish/signedMCRT. |
format | Online Article Text |
id | pubmed-9350858 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-93508582022-08-04 Meshless Monte Carlo radiation transfer method for curved geometries using signed distance functions McMillan, Lewis Bruce, Graham D. Dholakia, Kishan J Biomed Opt Special Section Celebrating 30 Years of Open Source Monte Carlo Codes in Biomedical Optics SIGNIFICANCE: Monte Carlo radiation transfer (MCRT) is the gold standard for modeling light transport in turbid media. Typical MCRT models use voxels or meshes to approximate experimental geometry. A voxel-based geometry does not allow for the precise modeling of smooth curved surfaces, such as may be found in biological systems or food and drink packaging. Mesh-based geometry allows arbitrary complex shapes with smooth curved surfaces to be modeled. However, mesh-based models also suffer from issues such as the computational cost of generating meshes and inaccuracies in how meshes handle reflections and refractions. AIM: We present our algorithm, which we term signedMCRT (sMCRT), a geometry-based method that uses signed distance functions (SDF) to represent the geometry of the model. SDFs are capable of modeling smooth curved surfaces precisely while also modeling complex geometries. APPROACH: We show that using SDFs to represent the problem’s geometry is more precise than voxel and mesh-based methods. RESULTS: sMCRT is validated against theoretical expressions, and voxel and mesh-based MCRT codes. We show that sMCRT can precisely model arbitrary complex geometries such as microvascular vessel network using SDFs. In comparison with the current state-of-the-art in MCRT methods specifically for curved surfaces, sMCRT is more precise for cases where the geometry can be defined using combinations of shapes. CONCLUSIONS: We believe that SDF-based MCRT models are a complementary method to voxel and mesh models in terms of being able to model complex geometries and accurately treat curved surfaces, with a focus on precise simulation of reflections and refractions. sMCRT is publicly available at https://github.com/lewisfish/signedMCRT. Society of Photo-Optical Instrumentation Engineers 2022-08-04 2022-08 /pmc/articles/PMC9350858/ /pubmed/35927789 http://dx.doi.org/10.1117/1.JBO.27.8.083003 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | Special Section Celebrating 30 Years of Open Source Monte Carlo Codes in Biomedical Optics McMillan, Lewis Bruce, Graham D. Dholakia, Kishan Meshless Monte Carlo radiation transfer method for curved geometries using signed distance functions |
title | Meshless Monte Carlo radiation transfer method for curved geometries using signed distance functions |
title_full | Meshless Monte Carlo radiation transfer method for curved geometries using signed distance functions |
title_fullStr | Meshless Monte Carlo radiation transfer method for curved geometries using signed distance functions |
title_full_unstemmed | Meshless Monte Carlo radiation transfer method for curved geometries using signed distance functions |
title_short | Meshless Monte Carlo radiation transfer method for curved geometries using signed distance functions |
title_sort | meshless monte carlo radiation transfer method for curved geometries using signed distance functions |
topic | Special Section Celebrating 30 Years of Open Source Monte Carlo Codes in Biomedical Optics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9350858/ https://www.ncbi.nlm.nih.gov/pubmed/35927789 http://dx.doi.org/10.1117/1.JBO.27.8.083003 |
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