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A prognostic Risk Score model for oral squamous cell carcinoma constructed by 6 glycolysis-immune-related genes
BACKGROUND: Oral squamous cell carcinoma (OSCC) is the most frequent tumor of the head and neck. The glycolysis-related genes and immune-related genes have been proven prognostic values in various cancers. Our study aimed to test the prognostic value of glycolysis-immune-related genes in OSCC. METHO...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9351085/ https://www.ncbi.nlm.nih.gov/pubmed/35922788 http://dx.doi.org/10.1186/s12903-022-02358-0 |
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author | Liu, Yi Wang, Tong Li, Ronghua |
author_facet | Liu, Yi Wang, Tong Li, Ronghua |
author_sort | Liu, Yi |
collection | PubMed |
description | BACKGROUND: Oral squamous cell carcinoma (OSCC) is the most frequent tumor of the head and neck. The glycolysis-related genes and immune-related genes have been proven prognostic values in various cancers. Our study aimed to test the prognostic value of glycolysis-immune-related genes in OSCC. METHODS: Data of OSCC patients were obtained from the Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. Enrichment analysis was applied to the glycolysis- and immune-related genes screened by differential expression analysis. Univariate Cox and LASSO Cox analyses were used to filtrate the genes related to the prognosis of OSCC and to construct Risk Score model. RESULTS: A Risk Score model was constructed by six glycolysis-immune-related genes (including ALDOC, VEGFA, HRG, PADI3, IGSF11 and MIPOL1). High risk OSCC patients (Risk Score >−0.3075) had significantly worse overall survival than that of low risk patients (Risk Score <−0.3075). CONCLUSIONS: The Risk Score model constructed basing on 6 glycolysis-immune-related genes was reliable in stratifying OSCC patients with different prognosis. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12903-022-02358-0. |
format | Online Article Text |
id | pubmed-9351085 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-93510852022-08-05 A prognostic Risk Score model for oral squamous cell carcinoma constructed by 6 glycolysis-immune-related genes Liu, Yi Wang, Tong Li, Ronghua BMC Oral Health Research BACKGROUND: Oral squamous cell carcinoma (OSCC) is the most frequent tumor of the head and neck. The glycolysis-related genes and immune-related genes have been proven prognostic values in various cancers. Our study aimed to test the prognostic value of glycolysis-immune-related genes in OSCC. METHODS: Data of OSCC patients were obtained from the Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. Enrichment analysis was applied to the glycolysis- and immune-related genes screened by differential expression analysis. Univariate Cox and LASSO Cox analyses were used to filtrate the genes related to the prognosis of OSCC and to construct Risk Score model. RESULTS: A Risk Score model was constructed by six glycolysis-immune-related genes (including ALDOC, VEGFA, HRG, PADI3, IGSF11 and MIPOL1). High risk OSCC patients (Risk Score >−0.3075) had significantly worse overall survival than that of low risk patients (Risk Score <−0.3075). CONCLUSIONS: The Risk Score model constructed basing on 6 glycolysis-immune-related genes was reliable in stratifying OSCC patients with different prognosis. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12903-022-02358-0. BioMed Central 2022-08-03 /pmc/articles/PMC9351085/ /pubmed/35922788 http://dx.doi.org/10.1186/s12903-022-02358-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Liu, Yi Wang, Tong Li, Ronghua A prognostic Risk Score model for oral squamous cell carcinoma constructed by 6 glycolysis-immune-related genes |
title | A prognostic Risk Score model for oral squamous cell carcinoma constructed by 6 glycolysis-immune-related genes |
title_full | A prognostic Risk Score model for oral squamous cell carcinoma constructed by 6 glycolysis-immune-related genes |
title_fullStr | A prognostic Risk Score model for oral squamous cell carcinoma constructed by 6 glycolysis-immune-related genes |
title_full_unstemmed | A prognostic Risk Score model for oral squamous cell carcinoma constructed by 6 glycolysis-immune-related genes |
title_short | A prognostic Risk Score model for oral squamous cell carcinoma constructed by 6 glycolysis-immune-related genes |
title_sort | prognostic risk score model for oral squamous cell carcinoma constructed by 6 glycolysis-immune-related genes |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9351085/ https://www.ncbi.nlm.nih.gov/pubmed/35922788 http://dx.doi.org/10.1186/s12903-022-02358-0 |
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