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Eliminating Transition State Calculations for Faster and More Accurate Reactivity Prediction in Sulfa-Michael Additions Relevant to Human Health and the Environment
[Image: see text] Fast and accurate computational approaches to predicting reactivity in sulfa-Michael additions are required for high-throughput screening in toxicology (e.g., predicting excess aquatic toxicity and skin sensitization), chemical synthesis, covalent drug design (e.g., targeting cyste...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9352231/ https://www.ncbi.nlm.nih.gov/pubmed/35936424 http://dx.doi.org/10.1021/acsomega.2c03739 |
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author | Townsend, Piers A. Farrar, Elliot H. E. Grayson, Matthew N. |
author_facet | Townsend, Piers A. Farrar, Elliot H. E. Grayson, Matthew N. |
author_sort | Townsend, Piers A. |
collection | PubMed |
description | [Image: see text] Fast and accurate computational approaches to predicting reactivity in sulfa-Michael additions are required for high-throughput screening in toxicology (e.g., predicting excess aquatic toxicity and skin sensitization), chemical synthesis, covalent drug design (e.g., targeting cysteine), and data set generation for machine learning. The kinetic glutathione chemoassay is a time-consuming in chemico method used to extract kinetic data in the form of log(k(GSH)) for organic electrophiles. In this work, we use density functional theory to compare the use of transition states (TSs) and enolate intermediate structures following C–S bond formation in the prediction of log(k(GSH)) for a diverse group of 1,4 Michael acceptors. Despite the widespread use of transition state calculations in the literature to predict sulfa-Michael reactivity, we observe that intermediate structures show much better performance for the prediction of log(k(GSH)), are faster to calculate, and easier to obtain than TSs. Furthermore, we show how linear combinations of atomic charges from the isolated Michael acceptors can further improve predictions, even when using inexpensive semiempirical quantum chemistry methods. Our models can be used widely in the chemical sciences (e.g., in the prediction of toxicity relevant to the environment and human health, synthesis planning, and the design of cysteine-targeting covalent inhibitors), and represent a low-cost, sustainable approach to reactivity assessment. |
format | Online Article Text |
id | pubmed-9352231 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-93522312022-08-05 Eliminating Transition State Calculations for Faster and More Accurate Reactivity Prediction in Sulfa-Michael Additions Relevant to Human Health and the Environment Townsend, Piers A. Farrar, Elliot H. E. Grayson, Matthew N. ACS Omega [Image: see text] Fast and accurate computational approaches to predicting reactivity in sulfa-Michael additions are required for high-throughput screening in toxicology (e.g., predicting excess aquatic toxicity and skin sensitization), chemical synthesis, covalent drug design (e.g., targeting cysteine), and data set generation for machine learning. The kinetic glutathione chemoassay is a time-consuming in chemico method used to extract kinetic data in the form of log(k(GSH)) for organic electrophiles. In this work, we use density functional theory to compare the use of transition states (TSs) and enolate intermediate structures following C–S bond formation in the prediction of log(k(GSH)) for a diverse group of 1,4 Michael acceptors. Despite the widespread use of transition state calculations in the literature to predict sulfa-Michael reactivity, we observe that intermediate structures show much better performance for the prediction of log(k(GSH)), are faster to calculate, and easier to obtain than TSs. Furthermore, we show how linear combinations of atomic charges from the isolated Michael acceptors can further improve predictions, even when using inexpensive semiempirical quantum chemistry methods. Our models can be used widely in the chemical sciences (e.g., in the prediction of toxicity relevant to the environment and human health, synthesis planning, and the design of cysteine-targeting covalent inhibitors), and represent a low-cost, sustainable approach to reactivity assessment. American Chemical Society 2022-07-21 /pmc/articles/PMC9352231/ /pubmed/35936424 http://dx.doi.org/10.1021/acsomega.2c03739 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Townsend, Piers A. Farrar, Elliot H. E. Grayson, Matthew N. Eliminating Transition State Calculations for Faster and More Accurate Reactivity Prediction in Sulfa-Michael Additions Relevant to Human Health and the Environment |
title | Eliminating Transition
State Calculations for Faster
and More Accurate Reactivity Prediction in Sulfa-Michael Additions
Relevant to Human Health and the Environment |
title_full | Eliminating Transition
State Calculations for Faster
and More Accurate Reactivity Prediction in Sulfa-Michael Additions
Relevant to Human Health and the Environment |
title_fullStr | Eliminating Transition
State Calculations for Faster
and More Accurate Reactivity Prediction in Sulfa-Michael Additions
Relevant to Human Health and the Environment |
title_full_unstemmed | Eliminating Transition
State Calculations for Faster
and More Accurate Reactivity Prediction in Sulfa-Michael Additions
Relevant to Human Health and the Environment |
title_short | Eliminating Transition
State Calculations for Faster
and More Accurate Reactivity Prediction in Sulfa-Michael Additions
Relevant to Human Health and the Environment |
title_sort | eliminating transition
state calculations for faster
and more accurate reactivity prediction in sulfa-michael additions
relevant to human health and the environment |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9352231/ https://www.ncbi.nlm.nih.gov/pubmed/35936424 http://dx.doi.org/10.1021/acsomega.2c03739 |
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