Cargando…

Guidelines for model adaptation: A study of the transferability of a general seagrass ecosystem Dynamic Bayesian Networks model

In general, it is not feasible to collect enough empirical data to capture the entire range of processes that define a complex system, either intrinsically or when viewing the system from a different geographical or temporal perspective. In this context, an alternative approach is to consider model...

Descripción completa

Detalles Bibliográficos
Autores principales: Hatum, Paula Sobenko, McMahon, Kathryn, Mengersen, Kerrie, Wu, Paul Pao‐Yen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9353019/
https://www.ncbi.nlm.nih.gov/pubmed/35949537
http://dx.doi.org/10.1002/ece3.9172
_version_ 1784762780869459968
author Hatum, Paula Sobenko
McMahon, Kathryn
Mengersen, Kerrie
Wu, Paul Pao‐Yen
author_facet Hatum, Paula Sobenko
McMahon, Kathryn
Mengersen, Kerrie
Wu, Paul Pao‐Yen
author_sort Hatum, Paula Sobenko
collection PubMed
description In general, it is not feasible to collect enough empirical data to capture the entire range of processes that define a complex system, either intrinsically or when viewing the system from a different geographical or temporal perspective. In this context, an alternative approach is to consider model transferability, which is the act of translating a model built for one environment to another less well‐known situation. Model transferability and adaptability may be extremely beneficial—approaches that aid in the reuse and adaption of models, particularly for sites with limited data, would benefit from widespread model uptake. Besides the reduced effort required to develop a model, data collection can be simplified when transferring a model to a different application context. The research presented in this paper focused on a case study to identify and implement guidelines for model adaptation. Our study adapted a general Dynamic Bayesian Networks (DBN) of a seagrass ecosystem to a new location where nodes were similar, but the conditional probability tables varied. We focused on two species of seagrass (Zostera noltei and Zostera marina) located in Arcachon Bay, France. Expert knowledge was used to complement peer‐reviewed literature to identify which components needed adjustment including parameterization and quantification of the model and desired outcomes. We adopted both linguistic labels and scenario‐based elicitation to elicit from experts the conditional probabilities used to quantify the DBN. Following the proposed guidelines, the model structure of the general DBN was retained, but the conditional probability tables were adapted for nodes that characterized the growth dynamics in Zostera spp. population located in Arcachon Bay, as well as the seasonal variation on their reproduction. Particular attention was paid to the light variable as it is a crucial driver of growth and physiology for seagrasses. Our guidelines provide a way to adapt a general DBN to specific ecosystems to maximize model reuse and minimize re‐development effort. Especially important from a transferability perspective are guidelines for ecosystems with limited data, and how simulation and prior predictive approaches can be used in these contexts.
format Online
Article
Text
id pubmed-9353019
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-93530192022-08-09 Guidelines for model adaptation: A study of the transferability of a general seagrass ecosystem Dynamic Bayesian Networks model Hatum, Paula Sobenko McMahon, Kathryn Mengersen, Kerrie Wu, Paul Pao‐Yen Ecol Evol Research Articles In general, it is not feasible to collect enough empirical data to capture the entire range of processes that define a complex system, either intrinsically or when viewing the system from a different geographical or temporal perspective. In this context, an alternative approach is to consider model transferability, which is the act of translating a model built for one environment to another less well‐known situation. Model transferability and adaptability may be extremely beneficial—approaches that aid in the reuse and adaption of models, particularly for sites with limited data, would benefit from widespread model uptake. Besides the reduced effort required to develop a model, data collection can be simplified when transferring a model to a different application context. The research presented in this paper focused on a case study to identify and implement guidelines for model adaptation. Our study adapted a general Dynamic Bayesian Networks (DBN) of a seagrass ecosystem to a new location where nodes were similar, but the conditional probability tables varied. We focused on two species of seagrass (Zostera noltei and Zostera marina) located in Arcachon Bay, France. Expert knowledge was used to complement peer‐reviewed literature to identify which components needed adjustment including parameterization and quantification of the model and desired outcomes. We adopted both linguistic labels and scenario‐based elicitation to elicit from experts the conditional probabilities used to quantify the DBN. Following the proposed guidelines, the model structure of the general DBN was retained, but the conditional probability tables were adapted for nodes that characterized the growth dynamics in Zostera spp. population located in Arcachon Bay, as well as the seasonal variation on their reproduction. Particular attention was paid to the light variable as it is a crucial driver of growth and physiology for seagrasses. Our guidelines provide a way to adapt a general DBN to specific ecosystems to maximize model reuse and minimize re‐development effort. Especially important from a transferability perspective are guidelines for ecosystems with limited data, and how simulation and prior predictive approaches can be used in these contexts. John Wiley and Sons Inc. 2022-08-04 /pmc/articles/PMC9353019/ /pubmed/35949537 http://dx.doi.org/10.1002/ece3.9172 Text en © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Hatum, Paula Sobenko
McMahon, Kathryn
Mengersen, Kerrie
Wu, Paul Pao‐Yen
Guidelines for model adaptation: A study of the transferability of a general seagrass ecosystem Dynamic Bayesian Networks model
title Guidelines for model adaptation: A study of the transferability of a general seagrass ecosystem Dynamic Bayesian Networks model
title_full Guidelines for model adaptation: A study of the transferability of a general seagrass ecosystem Dynamic Bayesian Networks model
title_fullStr Guidelines for model adaptation: A study of the transferability of a general seagrass ecosystem Dynamic Bayesian Networks model
title_full_unstemmed Guidelines for model adaptation: A study of the transferability of a general seagrass ecosystem Dynamic Bayesian Networks model
title_short Guidelines for model adaptation: A study of the transferability of a general seagrass ecosystem Dynamic Bayesian Networks model
title_sort guidelines for model adaptation: a study of the transferability of a general seagrass ecosystem dynamic bayesian networks model
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9353019/
https://www.ncbi.nlm.nih.gov/pubmed/35949537
http://dx.doi.org/10.1002/ece3.9172
work_keys_str_mv AT hatumpaulasobenko guidelinesformodeladaptationastudyofthetransferabilityofageneralseagrassecosystemdynamicbayesiannetworksmodel
AT mcmahonkathryn guidelinesformodeladaptationastudyofthetransferabilityofageneralseagrassecosystemdynamicbayesiannetworksmodel
AT mengersenkerrie guidelinesformodeladaptationastudyofthetransferabilityofageneralseagrassecosystemdynamicbayesiannetworksmodel
AT wupaulpaoyen guidelinesformodeladaptationastudyofthetransferabilityofageneralseagrassecosystemdynamicbayesiannetworksmodel