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Modified SIR model for COVID-19 transmission dynamics: Simulation with case study of UK, US and India

Corona virus disease 2019 (COVID-19) is an infectious disease and has spread over more than 200 countries since its outbreak in December 2019. This pandemic has posed the greatest threat to global public health and seems to have changing characteristics with altering variants, hence various epidemio...

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Autores principales: Rakshit, Pranati, Kumar, Soumen, Noeiaghdam, Samad, Fernandez-Gamiz, Unai, Altanji, Mohamed, Santra, Shyam Sundar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Author(s). Published by Elsevier B.V. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9353108/
https://www.ncbi.nlm.nih.gov/pubmed/35945965
http://dx.doi.org/10.1016/j.rinp.2022.105855
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author Rakshit, Pranati
Kumar, Soumen
Noeiaghdam, Samad
Fernandez-Gamiz, Unai
Altanji, Mohamed
Santra, Shyam Sundar
author_facet Rakshit, Pranati
Kumar, Soumen
Noeiaghdam, Samad
Fernandez-Gamiz, Unai
Altanji, Mohamed
Santra, Shyam Sundar
author_sort Rakshit, Pranati
collection PubMed
description Corona virus disease 2019 (COVID-19) is an infectious disease and has spread over more than 200 countries since its outbreak in December 2019. This pandemic has posed the greatest threat to global public health and seems to have changing characteristics with altering variants, hence various epidemiological and statistical models are getting developed to predict the infection spread, mortality rate and calibrating various impacting factors. But the aysmptomatic patient counts and demographical factors needs to be considered in model evaluation. Here we have proposed a new seven compartmental model, Susceptible- Exposed- Infected–Asymptomatic–Quarantined–Fatal–Recovered (SEIAQFR) which is based on classical Susceptible-Infected-Recovered (SIR) model dynamic of infectious disease, and considered factors like asymptomatic transmission and quarantine of patients. We have taken UK, US and India as a case study for model evaluation purpose. In our analysis, it is found that the Reproductive Rate ([Formula: see text]) of the disease is dynamic over a long period and provides better results in model performance ([Formula: see text] R-square score) when model is fitted across smaller time period. On an average [Formula: see text] cases are asymptomatic and have contributed to model accuracy. The model is employed to show accuracy in correspondence with different geographic data in both wave of disease spread. Different disease spreading factors like infection rate, recovery rate and mortality rate are well analyzed with best fit of real world data. Performance evaluation of this model has achieved good R-Square score which is [Formula: see text] for infection prediction and [Formula: see text] for death prediction and an average [Formula: see text] MAPE in different wave of the disease in UK, US and India.
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spelling pubmed-93531082022-08-05 Modified SIR model for COVID-19 transmission dynamics: Simulation with case study of UK, US and India Rakshit, Pranati Kumar, Soumen Noeiaghdam, Samad Fernandez-Gamiz, Unai Altanji, Mohamed Santra, Shyam Sundar Results Phys Article Corona virus disease 2019 (COVID-19) is an infectious disease and has spread over more than 200 countries since its outbreak in December 2019. This pandemic has posed the greatest threat to global public health and seems to have changing characteristics with altering variants, hence various epidemiological and statistical models are getting developed to predict the infection spread, mortality rate and calibrating various impacting factors. But the aysmptomatic patient counts and demographical factors needs to be considered in model evaluation. Here we have proposed a new seven compartmental model, Susceptible- Exposed- Infected–Asymptomatic–Quarantined–Fatal–Recovered (SEIAQFR) which is based on classical Susceptible-Infected-Recovered (SIR) model dynamic of infectious disease, and considered factors like asymptomatic transmission and quarantine of patients. We have taken UK, US and India as a case study for model evaluation purpose. In our analysis, it is found that the Reproductive Rate ([Formula: see text]) of the disease is dynamic over a long period and provides better results in model performance ([Formula: see text] R-square score) when model is fitted across smaller time period. On an average [Formula: see text] cases are asymptomatic and have contributed to model accuracy. The model is employed to show accuracy in correspondence with different geographic data in both wave of disease spread. Different disease spreading factors like infection rate, recovery rate and mortality rate are well analyzed with best fit of real world data. Performance evaluation of this model has achieved good R-Square score which is [Formula: see text] for infection prediction and [Formula: see text] for death prediction and an average [Formula: see text] MAPE in different wave of the disease in UK, US and India. The Author(s). Published by Elsevier B.V. 2022-09 2022-07-27 /pmc/articles/PMC9353108/ /pubmed/35945965 http://dx.doi.org/10.1016/j.rinp.2022.105855 Text en © 2022 The Author(s) Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Rakshit, Pranati
Kumar, Soumen
Noeiaghdam, Samad
Fernandez-Gamiz, Unai
Altanji, Mohamed
Santra, Shyam Sundar
Modified SIR model for COVID-19 transmission dynamics: Simulation with case study of UK, US and India
title Modified SIR model for COVID-19 transmission dynamics: Simulation with case study of UK, US and India
title_full Modified SIR model for COVID-19 transmission dynamics: Simulation with case study of UK, US and India
title_fullStr Modified SIR model for COVID-19 transmission dynamics: Simulation with case study of UK, US and India
title_full_unstemmed Modified SIR model for COVID-19 transmission dynamics: Simulation with case study of UK, US and India
title_short Modified SIR model for COVID-19 transmission dynamics: Simulation with case study of UK, US and India
title_sort modified sir model for covid-19 transmission dynamics: simulation with case study of uk, us and india
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9353108/
https://www.ncbi.nlm.nih.gov/pubmed/35945965
http://dx.doi.org/10.1016/j.rinp.2022.105855
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