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Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment
Family with sequence similarity 83 (FAM83) is a newly identified family of oncogenes whose members play important roles in signaling and cancer progression. However, a thorough understanding of the FAM83 family in tumors is still lacking. Here, we performed a comprehensive analysis of the expression...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9353330/ https://www.ncbi.nlm.nih.gov/pubmed/35938024 http://dx.doi.org/10.3389/fgene.2022.919559 |
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author | Yuan, Shangkun Huang, Zhisheng Qian, Xiaoying Wang, Yong Fang, Chen Chen, Renfang Zhang, Xinwei Xiao, Zhehao Wang, Qian Yu, Biao Li, Yong |
author_facet | Yuan, Shangkun Huang, Zhisheng Qian, Xiaoying Wang, Yong Fang, Chen Chen, Renfang Zhang, Xinwei Xiao, Zhehao Wang, Qian Yu, Biao Li, Yong |
author_sort | Yuan, Shangkun |
collection | PubMed |
description | Family with sequence similarity 83 (FAM83) is a newly identified family of oncogenes whose members play important roles in signaling and cancer progression. However, a thorough understanding of the FAM83 family in tumors is still lacking. Here, we performed a comprehensive analysis of the expression levels of the FAM83 family across cancers and patient prognoses using bioinformatics methods. We found that the expression levels of FAM83 family genes were upregulated in most tumors, and importantly, high expression levels of FAM83 family genes were related to poor prognosis in most tumors. In addition, we analyzed the relationship of FAM83 family genes with immune subtypes and the tumor microenvironment (TME). The results showed that FAM83 family genes were significantly associated with immune infiltrative subtypes and to varying degrees with the level of stromal cell infiltration and tumor stem cells. Finally, our study also showed the relationship between FAM83 family genes and drug sensitivity. Therefore, this pan-cancer analysis demonstrates the critical role of FAM83 family genes in tumor development and provides new clues for therapeutic strategies for cancer. |
format | Online Article Text |
id | pubmed-9353330 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93533302022-08-06 Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment Yuan, Shangkun Huang, Zhisheng Qian, Xiaoying Wang, Yong Fang, Chen Chen, Renfang Zhang, Xinwei Xiao, Zhehao Wang, Qian Yu, Biao Li, Yong Front Genet Genetics Family with sequence similarity 83 (FAM83) is a newly identified family of oncogenes whose members play important roles in signaling and cancer progression. However, a thorough understanding of the FAM83 family in tumors is still lacking. Here, we performed a comprehensive analysis of the expression levels of the FAM83 family across cancers and patient prognoses using bioinformatics methods. We found that the expression levels of FAM83 family genes were upregulated in most tumors, and importantly, high expression levels of FAM83 family genes were related to poor prognosis in most tumors. In addition, we analyzed the relationship of FAM83 family genes with immune subtypes and the tumor microenvironment (TME). The results showed that FAM83 family genes were significantly associated with immune infiltrative subtypes and to varying degrees with the level of stromal cell infiltration and tumor stem cells. Finally, our study also showed the relationship between FAM83 family genes and drug sensitivity. Therefore, this pan-cancer analysis demonstrates the critical role of FAM83 family genes in tumor development and provides new clues for therapeutic strategies for cancer. Frontiers Media S.A. 2022-07-22 /pmc/articles/PMC9353330/ /pubmed/35938024 http://dx.doi.org/10.3389/fgene.2022.919559 Text en Copyright © 2022 Yuan, Huang, Qian, Wang, Fang, Chen, Zhang, Xiao, Wang, Yu and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Yuan, Shangkun Huang, Zhisheng Qian, Xiaoying Wang, Yong Fang, Chen Chen, Renfang Zhang, Xinwei Xiao, Zhehao Wang, Qian Yu, Biao Li, Yong Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment |
title | Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment |
title_full | Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment |
title_fullStr | Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment |
title_full_unstemmed | Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment |
title_short | Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment |
title_sort | pan-cancer analysis of the fam83 family and its association with prognosis and tumor microenvironment |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9353330/ https://www.ncbi.nlm.nih.gov/pubmed/35938024 http://dx.doi.org/10.3389/fgene.2022.919559 |
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