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Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment

Family with sequence similarity 83 (FAM83) is a newly identified family of oncogenes whose members play important roles in signaling and cancer progression. However, a thorough understanding of the FAM83 family in tumors is still lacking. Here, we performed a comprehensive analysis of the expression...

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Autores principales: Yuan, Shangkun, Huang, Zhisheng, Qian, Xiaoying, Wang, Yong, Fang, Chen, Chen, Renfang, Zhang, Xinwei, Xiao, Zhehao, Wang, Qian, Yu, Biao, Li, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9353330/
https://www.ncbi.nlm.nih.gov/pubmed/35938024
http://dx.doi.org/10.3389/fgene.2022.919559
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author Yuan, Shangkun
Huang, Zhisheng
Qian, Xiaoying
Wang, Yong
Fang, Chen
Chen, Renfang
Zhang, Xinwei
Xiao, Zhehao
Wang, Qian
Yu, Biao
Li, Yong
author_facet Yuan, Shangkun
Huang, Zhisheng
Qian, Xiaoying
Wang, Yong
Fang, Chen
Chen, Renfang
Zhang, Xinwei
Xiao, Zhehao
Wang, Qian
Yu, Biao
Li, Yong
author_sort Yuan, Shangkun
collection PubMed
description Family with sequence similarity 83 (FAM83) is a newly identified family of oncogenes whose members play important roles in signaling and cancer progression. However, a thorough understanding of the FAM83 family in tumors is still lacking. Here, we performed a comprehensive analysis of the expression levels of the FAM83 family across cancers and patient prognoses using bioinformatics methods. We found that the expression levels of FAM83 family genes were upregulated in most tumors, and importantly, high expression levels of FAM83 family genes were related to poor prognosis in most tumors. In addition, we analyzed the relationship of FAM83 family genes with immune subtypes and the tumor microenvironment (TME). The results showed that FAM83 family genes were significantly associated with immune infiltrative subtypes and to varying degrees with the level of stromal cell infiltration and tumor stem cells. Finally, our study also showed the relationship between FAM83 family genes and drug sensitivity. Therefore, this pan-cancer analysis demonstrates the critical role of FAM83 family genes in tumor development and provides new clues for therapeutic strategies for cancer.
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spelling pubmed-93533302022-08-06 Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment Yuan, Shangkun Huang, Zhisheng Qian, Xiaoying Wang, Yong Fang, Chen Chen, Renfang Zhang, Xinwei Xiao, Zhehao Wang, Qian Yu, Biao Li, Yong Front Genet Genetics Family with sequence similarity 83 (FAM83) is a newly identified family of oncogenes whose members play important roles in signaling and cancer progression. However, a thorough understanding of the FAM83 family in tumors is still lacking. Here, we performed a comprehensive analysis of the expression levels of the FAM83 family across cancers and patient prognoses using bioinformatics methods. We found that the expression levels of FAM83 family genes were upregulated in most tumors, and importantly, high expression levels of FAM83 family genes were related to poor prognosis in most tumors. In addition, we analyzed the relationship of FAM83 family genes with immune subtypes and the tumor microenvironment (TME). The results showed that FAM83 family genes were significantly associated with immune infiltrative subtypes and to varying degrees with the level of stromal cell infiltration and tumor stem cells. Finally, our study also showed the relationship between FAM83 family genes and drug sensitivity. Therefore, this pan-cancer analysis demonstrates the critical role of FAM83 family genes in tumor development and provides new clues for therapeutic strategies for cancer. Frontiers Media S.A. 2022-07-22 /pmc/articles/PMC9353330/ /pubmed/35938024 http://dx.doi.org/10.3389/fgene.2022.919559 Text en Copyright © 2022 Yuan, Huang, Qian, Wang, Fang, Chen, Zhang, Xiao, Wang, Yu and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Yuan, Shangkun
Huang, Zhisheng
Qian, Xiaoying
Wang, Yong
Fang, Chen
Chen, Renfang
Zhang, Xinwei
Xiao, Zhehao
Wang, Qian
Yu, Biao
Li, Yong
Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment
title Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment
title_full Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment
title_fullStr Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment
title_full_unstemmed Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment
title_short Pan-cancer analysis of the FAM83 family and its association with prognosis and tumor microenvironment
title_sort pan-cancer analysis of the fam83 family and its association with prognosis and tumor microenvironment
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9353330/
https://www.ncbi.nlm.nih.gov/pubmed/35938024
http://dx.doi.org/10.3389/fgene.2022.919559
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