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RNA N1-methyladenosine regulator-mediated methylation modification patterns and heterogeneous signatures in glioma

N1-methyladenosine (m(1)A) is ubiquitous in eukaryotic RNA and regulates mRNA translation. However, little is known about its regulatory role in glioma. Here, we identified 4 m(1)A modification-related patterns based on m(1)A regulators in the TCGA (The Cancer Genome Atlas) and CGGA (Chinese Glioma...

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Autores principales: Mao, Meng, Chu, Qinjun, Lou, Yongli, Lv, Peipei, Wang, Lin-jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9354098/
https://www.ncbi.nlm.nih.gov/pubmed/35936006
http://dx.doi.org/10.3389/fimmu.2022.948630
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author Mao, Meng
Chu, Qinjun
Lou, Yongli
Lv, Peipei
Wang, Lin-jian
author_facet Mao, Meng
Chu, Qinjun
Lou, Yongli
Lv, Peipei
Wang, Lin-jian
author_sort Mao, Meng
collection PubMed
description N1-methyladenosine (m(1)A) is ubiquitous in eukaryotic RNA and regulates mRNA translation. However, little is known about its regulatory role in glioma. Here, we identified 4 m(1)A modification-related patterns based on m(1)A regulators in the TCGA (The Cancer Genome Atlas) and CGGA (Chinese Glioma Genome Atlas) cohorts. The differences in survival prognosis between different clusters were striking. In addition, stemness, genomic heterogeneity, tumor microenvironment (TME), and immune cell infiltration were also significantly different between the poor and best prognostic clusters. To reveal the underlying mechanism, differentially expressed genes (DEGs) between the poor and best prognostic clusters were identified, and then were integrated for weighted correlation network analysis (WGCNA). After Univariate Cox-LASSO-Multivariate Cox analyses, DEGs PLEK2 and ABCC3 were screened as the risk-hub genes and were selected to construct an m(1)A-related signature. Moreover, ABCC3 exacerbated glioma proliferation and was associated with temozolomide (TMZ) resistance. Overall, our study provided new insights into the function and potential therapeutic role of m(1)A in glioma.
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spelling pubmed-93540982022-08-06 RNA N1-methyladenosine regulator-mediated methylation modification patterns and heterogeneous signatures in glioma Mao, Meng Chu, Qinjun Lou, Yongli Lv, Peipei Wang, Lin-jian Front Immunol Immunology N1-methyladenosine (m(1)A) is ubiquitous in eukaryotic RNA and regulates mRNA translation. However, little is known about its regulatory role in glioma. Here, we identified 4 m(1)A modification-related patterns based on m(1)A regulators in the TCGA (The Cancer Genome Atlas) and CGGA (Chinese Glioma Genome Atlas) cohorts. The differences in survival prognosis between different clusters were striking. In addition, stemness, genomic heterogeneity, tumor microenvironment (TME), and immune cell infiltration were also significantly different between the poor and best prognostic clusters. To reveal the underlying mechanism, differentially expressed genes (DEGs) between the poor and best prognostic clusters were identified, and then were integrated for weighted correlation network analysis (WGCNA). After Univariate Cox-LASSO-Multivariate Cox analyses, DEGs PLEK2 and ABCC3 were screened as the risk-hub genes and were selected to construct an m(1)A-related signature. Moreover, ABCC3 exacerbated glioma proliferation and was associated with temozolomide (TMZ) resistance. Overall, our study provided new insights into the function and potential therapeutic role of m(1)A in glioma. Frontiers Media S.A. 2022-07-22 /pmc/articles/PMC9354098/ /pubmed/35936006 http://dx.doi.org/10.3389/fimmu.2022.948630 Text en Copyright © 2022 Mao, Chu, Lou, Lv and Wang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Mao, Meng
Chu, Qinjun
Lou, Yongli
Lv, Peipei
Wang, Lin-jian
RNA N1-methyladenosine regulator-mediated methylation modification patterns and heterogeneous signatures in glioma
title RNA N1-methyladenosine regulator-mediated methylation modification patterns and heterogeneous signatures in glioma
title_full RNA N1-methyladenosine regulator-mediated methylation modification patterns and heterogeneous signatures in glioma
title_fullStr RNA N1-methyladenosine regulator-mediated methylation modification patterns and heterogeneous signatures in glioma
title_full_unstemmed RNA N1-methyladenosine regulator-mediated methylation modification patterns and heterogeneous signatures in glioma
title_short RNA N1-methyladenosine regulator-mediated methylation modification patterns and heterogeneous signatures in glioma
title_sort rna n1-methyladenosine regulator-mediated methylation modification patterns and heterogeneous signatures in glioma
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9354098/
https://www.ncbi.nlm.nih.gov/pubmed/35936006
http://dx.doi.org/10.3389/fimmu.2022.948630
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