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An Intelligent Rice Yield Trait Evaluation System Based on Threshed Panicle Compensation

High-throughput phenotyping of yield-related traits is meaningful and necessary for rice breeding and genetic study. The conventional method for rice yield-related trait evaluation faces the problems of rice threshing difficulties, measurement process complexity, and low efficiency. To solve these p...

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Autores principales: Huang, Chenglong, Li, Weikun, Zhang, Zhongfu, Hua, Xiangdong, Yang, Junya, Ye, Junli, Duan, Lingfeng, Liang, Xiuying, Yang, Wanneng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9354939/
https://www.ncbi.nlm.nih.gov/pubmed/35937323
http://dx.doi.org/10.3389/fpls.2022.900408
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author Huang, Chenglong
Li, Weikun
Zhang, Zhongfu
Hua, Xiangdong
Yang, Junya
Ye, Junli
Duan, Lingfeng
Liang, Xiuying
Yang, Wanneng
author_facet Huang, Chenglong
Li, Weikun
Zhang, Zhongfu
Hua, Xiangdong
Yang, Junya
Ye, Junli
Duan, Lingfeng
Liang, Xiuying
Yang, Wanneng
author_sort Huang, Chenglong
collection PubMed
description High-throughput phenotyping of yield-related traits is meaningful and necessary for rice breeding and genetic study. The conventional method for rice yield-related trait evaluation faces the problems of rice threshing difficulties, measurement process complexity, and low efficiency. To solve these problems, a novel intelligent system, which includes an integrated threshing unit, grain conveyor-imaging units, threshed panicle conveyor-imaging unit, and specialized image analysis software has been proposed to achieve rice yield trait evaluation with high throughput and high accuracy. To improve the threshed panicle detection accuracy, the Region of Interest Align, Convolution Batch normalization activation with Leaky Relu module, Squeeze-and-Excitation unit, and optimal anchor size have been adopted to optimize the Faster-RCNN architecture, termed ‘TPanicle-RCNN,’ and the new model achieved F1 score 0.929 with an increase of 0.044, which was robust to indica and japonica varieties. Additionally, AI cloud computing was adopted, which dramatically reduced the system cost and improved flexibility. To evaluate the system accuracy and efficiency, 504 panicle samples were tested, and the total spikelet measurement error decreased from 11.44 to 2.99% with threshed panicle compensation. The average measuring efficiency was approximately 40 s per sample, which was approximately twenty times more efficient than manual measurement. In this study, an automatic and intelligent system for rice yield-related trait evaluation was developed, which would provide an efficient and reliable tool for rice breeding and genetic research.
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spelling pubmed-93549392022-08-06 An Intelligent Rice Yield Trait Evaluation System Based on Threshed Panicle Compensation Huang, Chenglong Li, Weikun Zhang, Zhongfu Hua, Xiangdong Yang, Junya Ye, Junli Duan, Lingfeng Liang, Xiuying Yang, Wanneng Front Plant Sci Plant Science High-throughput phenotyping of yield-related traits is meaningful and necessary for rice breeding and genetic study. The conventional method for rice yield-related trait evaluation faces the problems of rice threshing difficulties, measurement process complexity, and low efficiency. To solve these problems, a novel intelligent system, which includes an integrated threshing unit, grain conveyor-imaging units, threshed panicle conveyor-imaging unit, and specialized image analysis software has been proposed to achieve rice yield trait evaluation with high throughput and high accuracy. To improve the threshed panicle detection accuracy, the Region of Interest Align, Convolution Batch normalization activation with Leaky Relu module, Squeeze-and-Excitation unit, and optimal anchor size have been adopted to optimize the Faster-RCNN architecture, termed ‘TPanicle-RCNN,’ and the new model achieved F1 score 0.929 with an increase of 0.044, which was robust to indica and japonica varieties. Additionally, AI cloud computing was adopted, which dramatically reduced the system cost and improved flexibility. To evaluate the system accuracy and efficiency, 504 panicle samples were tested, and the total spikelet measurement error decreased from 11.44 to 2.99% with threshed panicle compensation. The average measuring efficiency was approximately 40 s per sample, which was approximately twenty times more efficient than manual measurement. In this study, an automatic and intelligent system for rice yield-related trait evaluation was developed, which would provide an efficient and reliable tool for rice breeding and genetic research. Frontiers Media S.A. 2022-07-22 /pmc/articles/PMC9354939/ /pubmed/35937323 http://dx.doi.org/10.3389/fpls.2022.900408 Text en Copyright © 2022 Huang, Li, Zhang, Hua, Yang, Ye, Duan, Liang and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Huang, Chenglong
Li, Weikun
Zhang, Zhongfu
Hua, Xiangdong
Yang, Junya
Ye, Junli
Duan, Lingfeng
Liang, Xiuying
Yang, Wanneng
An Intelligent Rice Yield Trait Evaluation System Based on Threshed Panicle Compensation
title An Intelligent Rice Yield Trait Evaluation System Based on Threshed Panicle Compensation
title_full An Intelligent Rice Yield Trait Evaluation System Based on Threshed Panicle Compensation
title_fullStr An Intelligent Rice Yield Trait Evaluation System Based on Threshed Panicle Compensation
title_full_unstemmed An Intelligent Rice Yield Trait Evaluation System Based on Threshed Panicle Compensation
title_short An Intelligent Rice Yield Trait Evaluation System Based on Threshed Panicle Compensation
title_sort intelligent rice yield trait evaluation system based on threshed panicle compensation
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9354939/
https://www.ncbi.nlm.nih.gov/pubmed/35937323
http://dx.doi.org/10.3389/fpls.2022.900408
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